Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0864
         (714 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_03_1127 - 27807784-27807963,27808362-27808460,27809076-278091...    32   0.52 
07_01_0353 + 2563807-2564496,2564595-2564660,2564853-2564918,256...    29   3.7  
01_01_1018 - 8046819-8046876,8046995-8047212,8048099-8048177,804...    29   3.7  

>06_03_1127 -
           27807784-27807963,27808362-27808460,27809076-27809165,
           27809272-27809404,27809539-27809624,27810028-27810099,
           27810329-27810415,27810485-27810616,27810718-27810789,
           27810957-27811037,27811871-27811963,27812298-27812465
          Length = 430

 Score = 31.9 bits (69), Expect = 0.52
 Identities = 17/49 (34%), Positives = 24/49 (48%)
 Frame = +2

Query: 338 TQYIEEEFVSQQADTIRSLAGHTSDLKRFITENNGKDLSLAVYLFDEYL 484
           T Y     +S     +  LAGHT+D+     E  G++L LA  L D+ L
Sbjct: 272 TYYKTASLISNSCKAVAILAGHTADVSMLAYE-YGRNLGLAFQLIDDVL 319


>07_01_0353 +
           2563807-2564496,2564595-2564660,2564853-2564918,
           2565044-2565115,2565196-2565261,2565355-2565417,
           2565505-2565570,2565963-2566062,2567403-2567504,
           2567772-2567995,2568200-2568314,2568653-2568763,
           2568873-2569088,2569426-2569624,2570690-2570790,
           2570872-2570919,2571052-2571236,2571345-2571462,
           2571572-2571699,2571981-2572107,2572529-2572647,
           2572770-2572938,2573078-2573162,2573247-2573320,
           2573449-2573568,2574068-2574251,2574343-2574464,
           2574548-2574755,2574885-2574958,2575047-2575185,
           2575275-2575456,2575852-2576007,2576153-2576284,
           2576508-2576566,2576913-2576945,2577065-2577196,
           2577303-2577479
          Length = 1675

 Score = 29.1 bits (62), Expect = 3.7
 Identities = 14/46 (30%), Positives = 25/46 (54%)
 Frame = +3

Query: 165 SSHTTLKGDKGSNYTVEVGHEIGALAKALDRRSSLPRGFSSSTGKS 302
           +S+ TL   +  + T  V  ++G+   ++D+ SS+P    SST  S
Sbjct: 166 ASNATLNSPRSPSVTSSVTKKVGSRTSSMDKGSSMPIRKKSSTADS 211


>01_01_1018 -
           8046819-8046876,8046995-8047212,8048099-8048177,
           8048455-8048540,8048698-8048983,8049063-8049205,
           8049308-8049508,8049626-8049754,8050463-8050738,
           8050823-8051098,8051364-8052364,8052452-8052634,
           8052865-8052937,8053205-8053313,8053622-8053785
          Length = 1093

 Score = 29.1 bits (62), Expect = 3.7
 Identities = 17/46 (36%), Positives = 23/46 (50%)
 Frame = +2

Query: 302 TKNSDLLHDAEITQYIEEEFVSQQADTIRSLAGHTSDLKRFITENN 439
           T N DL H A+I  YI  E    +   ++   GHTSD + F  E +
Sbjct: 269 TGNRDLYH-AQIHPYINGEHKRDRCIQMKEKLGHTSDHEGFSREKS 313


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,714,305
Number of Sequences: 37544
Number of extensions: 318993
Number of successful extensions: 701
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 683
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 701
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1851002996
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)