Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= mg--0864
(714 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_21296| Best HMM Match : No HMM Matches (HMM E-Value=.) 41 9e-04
SB_46661| Best HMM Match : Ferritin (HMM E-Value=0.18) 39 0.003
SB_29575| Best HMM Match : No HMM Matches (HMM E-Value=.) 37 0.014
SB_27134| Best HMM Match : No HMM Matches (HMM E-Value=.) 36 0.025
SB_27133| Best HMM Match : No HMM Matches (HMM E-Value=.) 36 0.033
SB_20306| Best HMM Match : Vicilin_N (HMM E-Value=1.8) 35 0.057
SB_39858| Best HMM Match : Spectrin (HMM E-Value=2.6e-05) 32 0.40
SB_39577| Best HMM Match : DUF1213 (HMM E-Value=0.54) 32 0.53
SB_39578| Best HMM Match : DUF1213 (HMM E-Value=0.032) 31 0.70
SB_12078| Best HMM Match : Ubie_methyltran (HMM E-Value=0.17) 28 6.5
SB_18529| Best HMM Match : DUF1388 (HMM E-Value=3.5) 28 8.6
SB_5548| Best HMM Match : PT (HMM E-Value=3.1) 28 8.6
>SB_21296| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 358
Score = 41.1 bits (92), Expect = 9e-04
Identities = 19/59 (32%), Positives = 37/59 (62%)
Frame = +2
Query: 245 SLGPQKQLAERIFFIHREVTKNSDLLHDAEITQYIEEEFVSQQADTIRSLAGHTSDLKR 421
+L +K + + + +H+ K+ D A++T +IE F+++Q + I+ LAGH ++LKR
Sbjct: 286 ALDLEKHVNQALLDLHKIAEKHGD----AQMTDFIEGNFLTEQVEAIKELAGHLTNLKR 340
>SB_46661| Best HMM Match : Ferritin (HMM E-Value=0.18)
Length = 88
Score = 39.1 bits (87), Expect = 0.003
Identities = 19/67 (28%), Positives = 40/67 (59%)
Frame = +2
Query: 245 SLGPQKQLAERIFFIHREVTKNSDLLHDAEITQYIEEEFVSQQADTIRSLAGHTSDLKRF 424
+L +K++ + +HR+ + +D A++ +IEE F+++Q D+I+ L+ + S L+R
Sbjct: 17 ALALEKEILSSLQALHRKAQEEND----AQMQDFIEETFLNEQMDSIKQLSNYVSTLRRL 72
Query: 425 ITENNGK 445
E G+
Sbjct: 73 GGEGLGE 79
>SB_29575| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 394
Score = 37.1 bits (82), Expect = 0.014
Identities = 14/42 (33%), Positives = 31/42 (73%)
Frame = +2
Query: 296 EVTKNSDLLHDAEITQYIEEEFVSQQADTIRSLAGHTSDLKR 421
E+ K ++ DA+++ +IE+ F+++Q ++IR L+G+ + LK+
Sbjct: 94 ELEKTAEKNGDAQMSDFIEDHFLTEQVESIRELSGYIAVLKK 135
>SB_27134| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 289
Score = 36.3 bits (80), Expect = 0.025
Identities = 15/59 (25%), Positives = 36/59 (61%)
Frame = +2
Query: 245 SLGPQKQLAERIFFIHREVTKNSDLLHDAEITQYIEEEFVSQQADTIRSLAGHTSDLKR 421
+L +K + + + +H+ K+ D +++ ++E ++++Q + I+ LAGH ++LKR
Sbjct: 218 ALDLEKHVNQALLDLHKVAEKHGD----SQMQDWLESHYLTEQVEAIKELAGHLTNLKR 272
>SB_27133| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 304
Score = 35.9 bits (79), Expect = 0.033
Identities = 15/59 (25%), Positives = 36/59 (61%)
Frame = +2
Query: 245 SLGPQKQLAERIFFIHREVTKNSDLLHDAEITQYIEEEFVSQQADTIRSLAGHTSDLKR 421
+L +K + + + +H+ K+ D +++ ++E ++++Q + I+ LAGH ++LKR
Sbjct: 233 ALDLEKHVNQALHDLHKVAEKHGD----SQMQDWLESHYLTEQVEAIKELAGHMTNLKR 287
>SB_20306| Best HMM Match : Vicilin_N (HMM E-Value=1.8)
Length = 360
Score = 35.1 bits (77), Expect = 0.057
Identities = 23/72 (31%), Positives = 39/72 (54%)
Frame = +3
Query: 240 AKALDRRSSLPRGFSSSTGKSLKTATSSTMLRSLNTSRRNS*VSKPIRFVASRVTPRTSS 419
++ +++SL +S SLK + ++ SL TSR+ K R + + +P+TSS
Sbjct: 101 SRKTSQKTSLNASRKTSRKTSLKRSLKTSPKTSLKTSRKTD--RKKSRNTSPKRSPKTSS 158
Query: 420 GS*PRTTGKTCL 455
S P+T+ KT L
Sbjct: 159 KSSPKTSPKTSL 170
Score = 34.3 bits (75), Expect = 0.100
Identities = 22/73 (30%), Positives = 39/73 (53%)
Frame = +3
Query: 240 AKALDRRSSLPRGFSSSTGKSLKTATSSTMLRSLNTSRRNS*VSKPIRFVASRVTPRTSS 419
++ R++SL R +S SLKT+ + +S NTS + S K + + +P+TS
Sbjct: 113 SRKTSRKTSLKRSLKTSPKTSLKTSRKTDRKKSRNTSPKRS--PKTSSKSSPKTSPKTSL 170
Query: 420 GS*PRTTGKTCLS 458
+ +T+ KT L+
Sbjct: 171 KTSSKTSPKTSLN 183
>SB_39858| Best HMM Match : Spectrin (HMM E-Value=2.6e-05)
Length = 3397
Score = 32.3 bits (70), Expect = 0.40
Identities = 21/58 (36%), Positives = 31/58 (53%), Gaps = 8/58 (13%)
Frame = +2
Query: 293 REVTKNSDLLHDAEITQYIE--------EEFVSQQADTIRSLAGHTSDLKRFITENNG 442
+EVT N+ L D +TQ E EE+V + IR + T +KR+IT++NG
Sbjct: 182 QEVT-NAVTLQDQPVTQSFEPTSEEEKVEEYVDEYGHVIRCITRRTLVIKRYITDDNG 238
>SB_39577| Best HMM Match : DUF1213 (HMM E-Value=0.54)
Length = 240
Score = 31.9 bits (69), Expect = 0.53
Identities = 22/70 (31%), Positives = 35/70 (50%)
Frame = +3
Query: 240 AKALDRRSSLPRGFSSSTGKSLKTATSSTMLRSLNTSRRNS*VSKPIRFVASRVTPRTSS 419
++ RR+SL R +S S KT ++ S TS + P +S+ +P+TS
Sbjct: 85 SRKTSRRTSLKRSLKTSPKTSPKTMRMKSLKTSPKTSPEIGPRTSPK--TSSKTSPKTSP 142
Query: 420 GS*PRTTGKT 449
S P+T+ KT
Sbjct: 143 KSSPKTSPKT 152
>SB_39578| Best HMM Match : DUF1213 (HMM E-Value=0.032)
Length = 521
Score = 31.5 bits (68), Expect = 0.70
Identities = 22/68 (32%), Positives = 35/68 (51%)
Frame = +3
Query: 255 RRSSLPRGFSSSTGKSLKTATSSTMLRSLNTSRRNS*VSKPIRFVASRVTPRTSSGS*PR 434
R++S S S KT+ + ++SL TS + S P R +P+TSS + P+
Sbjct: 334 RKTSRKTSLKRSLKTSPKTSPKTMRMKSLKTSPKTSPEISP------RTSPKTSSKTSPK 387
Query: 435 TTGKTCLS 458
T+ KT L+
Sbjct: 388 TSLKTSLN 395
Score = 29.9 bits (64), Expect = 2.1
Identities = 21/63 (33%), Positives = 33/63 (52%), Gaps = 2/63 (3%)
Frame = +3
Query: 258 RSSLPRGFSSSTGKSLKTATSSTMLRSLNTSRRNS*VSKPIRFVASRVTPR--TSSGS*P 431
++SL +S SLKT+ ++M SL TSRR S + P + + + R TS + P
Sbjct: 154 KTSLKTSLKASLKTSLKTSLKTSMKTSLKTSRRTSLKTCPKTSLETSMKTRLNTSQKTSP 213
Query: 432 RTT 440
T+
Sbjct: 214 ETS 216
>SB_12078| Best HMM Match : Ubie_methyltran (HMM E-Value=0.17)
Length = 237
Score = 28.3 bits (60), Expect = 6.5
Identities = 12/32 (37%), Positives = 18/32 (56%)
Frame = +3
Query: 96 DDSWEKTIGLIKHVTKRGGKMDFSSHTTLKGD 191
+DS ++ +G +K V K GG+ F H K D
Sbjct: 160 EDSLDQLLGEVKRVLKPGGRFYFIEHIADKSD 191
>SB_18529| Best HMM Match : DUF1388 (HMM E-Value=3.5)
Length = 435
Score = 27.9 bits (59), Expect = 8.6
Identities = 23/80 (28%), Positives = 34/80 (42%)
Frame = +3
Query: 138 TKRGGKMDFSSHTTLKGDKGSNYTVEVGHEIGALAKALDRRSSLPRGFSSSTGKSLKTAT 317
TK K S T KG ++ + H+ + + ++S SS+T SLKT T
Sbjct: 52 TKTSRKTKTSLKTKTKGKTRTSSKTKTSHKTKT---SRNTKTSRKTKTSSNTKTSLKTKT 108
Query: 318 SSTMLRSLNTSRRNS*VSKP 377
S S NT + +KP
Sbjct: 109 SRNTKTSRNTKTKPQDKNKP 128
>SB_5548| Best HMM Match : PT (HMM E-Value=3.1)
Length = 157
Score = 27.9 bits (59), Expect = 8.6
Identities = 17/55 (30%), Positives = 30/55 (54%)
Frame = +3
Query: 285 SSTGKSLKTATSSTMLRSLNTSRRNS*VSKPIRFVASRVTPRTSSGS*PRTTGKT 449
+S S KT+ + ++SL T+ + S K R + +P+TS + P+T+ KT
Sbjct: 5 TSPKTSPKTSQKTMRIKSLKTTPKTS--PKTRRKTGRKTSPKTSPKTSPKTSPKT 57
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,465,487
Number of Sequences: 59808
Number of extensions: 358766
Number of successful extensions: 803
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 746
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 798
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1889780269
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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