Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= mg--0864
(714 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AC024791-6|AAF60660.2| 782|Caenorhabditis elegans Human spg (sp... 35 0.050
AF016447-16|AAG24016.1| 170|Caenorhabditis elegans Ferritin pro... 34 0.088
AF106592-2|AAK21364.1| 170|Caenorhabditis elegans Ferritin prot... 31 0.82
Z75533-3|CAA99822.1| 868|Caenorhabditis elegans Hypothetical pr... 30 1.9
Z81016-6|CAB02667.1| 1573|Caenorhabditis elegans Hypothetical pr... 28 5.8
Z48621-13|CAA88549.1| 1573|Caenorhabditis elegans Hypothetical p... 28 5.8
U80447-8|AAB37812.3| 900|Caenorhabditis elegans Patched related... 28 5.8
U28735-8|AAF99957.2| 434|Caenorhabditis elegans Acetylcholine r... 28 5.8
AY519852-1|AAR89633.1| 434|Caenorhabditis elegans acetylcholine... 28 5.8
U38937-1|AAA93079.1| 441|Caenorhabditis elegans LIN-1 protein. 28 7.6
U38935-1|AAB60254.1| 441|Caenorhabditis elegans LIN-1 protein. 28 7.6
AF067606-1|AAC17530.3| 441|Caenorhabditis elegans Abnormal cell... 28 7.6
>AC024791-6|AAF60660.2| 782|Caenorhabditis elegans Human spg
(spastic paraplegia)protein 7 protein.
Length = 782
Score = 35.1 bits (77), Expect = 0.050
Identities = 18/52 (34%), Positives = 25/52 (48%)
Frame = +2
Query: 293 REVTKNSDLLHDAEITQYIEEEFVSQQADTIRSLAGHTSDLKRFITENNGKD 448
+ V K ++LH Q EE F +Q TIR A +DLK+F + D
Sbjct: 41 KSVLKQQEVLHLLAKDQRFEERFFNQVQQTIRYFASKPNDLKKFFRKEASTD 92
>AF016447-16|AAG24016.1| 170|Caenorhabditis elegans Ferritin
protein 1 protein.
Length = 170
Score = 34.3 bits (75), Expect = 0.088
Identities = 12/33 (36%), Positives = 23/33 (69%)
Frame = +2
Query: 323 HDAEITQYIEEEFVSQQADTIRSLAGHTSDLKR 421
+DA +T YI+E+++ +Q +I A H +++KR
Sbjct: 121 NDAHLTNYIQEKYLEEQVHSINEFARHIANIKR 153
>AF106592-2|AAK21364.1| 170|Caenorhabditis elegans Ferritin protein
2 protein.
Length = 170
Score = 31.1 bits (67), Expect = 0.82
Identities = 12/33 (36%), Positives = 22/33 (66%)
Frame = +2
Query: 323 HDAEITQYIEEEFVSQQADTIRSLAGHTSDLKR 421
+DA +T +IEE+++ +Q +I A ++LKR
Sbjct: 121 NDAHLTDFIEEKYLDEQVKSINEFARMVANLKR 153
>Z75533-3|CAA99822.1| 868|Caenorhabditis elegans Hypothetical
protein C54G4.4 protein.
Length = 868
Score = 29.9 bits (64), Expect = 1.9
Identities = 14/33 (42%), Positives = 21/33 (63%)
Frame = +3
Query: 228 IGALAKALDRRSSLPRGFSSSTGKSLKTATSST 326
+GA K LDR S+LP ST + L++A S++
Sbjct: 371 LGAQRKCLDRGSTLPLRIDDSTRRGLRSALSAS 403
>Z81016-6|CAB02667.1| 1573|Caenorhabditis elegans Hypothetical protein
F21G4.2 protein.
Length = 1573
Score = 28.3 bits (60), Expect = 5.8
Identities = 18/50 (36%), Positives = 22/50 (44%)
Frame = +2
Query: 296 EVTKNSDLLHDAEITQYIEEEFVSQQADTIRSLAGHTSDLKRFITENNGK 445
E T D+ DA I + I EEF + TI D R I N+GK
Sbjct: 1496 EATAAVDVSTDALIQKTIREEFANATVLTIAHRLNTIMDYDRIIVLNDGK 1545
>Z48621-13|CAA88549.1| 1573|Caenorhabditis elegans Hypothetical
protein F21G4.2 protein.
Length = 1573
Score = 28.3 bits (60), Expect = 5.8
Identities = 18/50 (36%), Positives = 22/50 (44%)
Frame = +2
Query: 296 EVTKNSDLLHDAEITQYIEEEFVSQQADTIRSLAGHTSDLKRFITENNGK 445
E T D+ DA I + I EEF + TI D R I N+GK
Sbjct: 1496 EATAAVDVSTDALIQKTIREEFANATVLTIAHRLNTIMDYDRIIVLNDGK 1545
>U80447-8|AAB37812.3| 900|Caenorhabditis elegans Patched related
family protein 10 protein.
Length = 900
Score = 28.3 bits (60), Expect = 5.8
Identities = 11/26 (42%), Positives = 15/26 (57%)
Frame = +2
Query: 569 FRYKYGCLIVMYPFLF*AKNMLCNCF 646
F + YG L+ YPF+F +L CF
Sbjct: 15 FFHSYGLLVSGYPFIFLVSPILVTCF 40
>U28735-8|AAF99957.2| 434|Caenorhabditis elegans Acetylcholine
receptor protein 22 protein.
Length = 434
Score = 28.3 bits (60), Expect = 5.8
Identities = 11/40 (27%), Positives = 24/40 (60%)
Frame = +2
Query: 347 IEEEFVSQQADTIRSLAGHTSDLKRFITENNGKDLSLAVY 466
IEE+F S+ AD ++ L ++KR++ E + + + ++
Sbjct: 363 IEEDFCSKPADLVQELRFCMEEIKRYLDEQDSTEKNRIIW 402
>AY519852-1|AAR89633.1| 434|Caenorhabditis elegans acetylcholine
receptor (51.1 kD)(acr-22) protein.
Length = 434
Score = 28.3 bits (60), Expect = 5.8
Identities = 11/40 (27%), Positives = 24/40 (60%)
Frame = +2
Query: 347 IEEEFVSQQADTIRSLAGHTSDLKRFITENNGKDLSLAVY 466
IEE+F S+ AD ++ L ++KR++ E + + + ++
Sbjct: 363 IEEDFCSKPADLVQELRFCMEEIKRYLDEQDSTEKNRIIW 402
>U38937-1|AAA93079.1| 441|Caenorhabditis elegans LIN-1 protein.
Length = 441
Score = 27.9 bits (59), Expect = 7.6
Identities = 24/65 (36%), Positives = 28/65 (43%), Gaps = 1/65 (1%)
Frame = +3
Query: 270 PRGFSSSTGKSLKTATSSTMLRSLNTSRRNS*VSKPIRFVASRVTPRTSSG-S*PRTTGK 446
PRG + + SL T S S++T V P VAS TP TSS R K
Sbjct: 198 PRGNTDFSALSL-LGTDSPTTHSVSTPSPTDSVCSPSSSVASSATPSTSSPVDESRQCRK 256
Query: 447 TCLSP 461
LSP
Sbjct: 257 RSLSP 261
>U38935-1|AAB60254.1| 441|Caenorhabditis elegans LIN-1 protein.
Length = 441
Score = 27.9 bits (59), Expect = 7.6
Identities = 24/65 (36%), Positives = 28/65 (43%), Gaps = 1/65 (1%)
Frame = +3
Query: 270 PRGFSSSTGKSLKTATSSTMLRSLNTSRRNS*VSKPIRFVASRVTPRTSSG-S*PRTTGK 446
PRG + + SL T S S++T V P VAS TP TSS R K
Sbjct: 198 PRGNTDFSALSL-LGTDSPTTHSVSTPSPTDSVCSPSSSVASSATPSTSSPVDESRQCRK 256
Query: 447 TCLSP 461
LSP
Sbjct: 257 RSLSP 261
>AF067606-1|AAC17530.3| 441|Caenorhabditis elegans Abnormal cell
lineage protein 1 protein.
Length = 441
Score = 27.9 bits (59), Expect = 7.6
Identities = 24/65 (36%), Positives = 28/65 (43%), Gaps = 1/65 (1%)
Frame = +3
Query: 270 PRGFSSSTGKSLKTATSSTMLRSLNTSRRNS*VSKPIRFVASRVTPRTSSG-S*PRTTGK 446
PRG + + SL T S S++T V P VAS TP TSS R K
Sbjct: 198 PRGNTDFSALSL-LGTDSPTTHSVSTPSPTDSVCSPSSSVASSATPSTSSPVDESRQCRK 256
Query: 447 TCLSP 461
LSP
Sbjct: 257 RSLSP 261
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,561,467
Number of Sequences: 27780
Number of extensions: 280203
Number of successful extensions: 714
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 687
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 714
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1666201324
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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