Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0864
         (714 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY350618-1|AAQ57660.1|  425|Apis mellifera complementary sex det...    23   2.2  
EF531707-1|ABP57431.1|  138|Apis mellifera structural cuticle pr...    22   5.0  
DQ325121-1|ABD14135.1|  181|Apis mellifera complementary sex det...    22   6.6  
DQ325120-1|ABD14134.1|  181|Apis mellifera complementary sex det...    22   6.6  
DQ325119-1|ABD14133.1|  181|Apis mellifera complementary sex det...    22   6.6  
DQ325118-1|ABD14132.1|  181|Apis mellifera complementary sex det...    22   6.6  
DQ325117-1|ABD14131.1|  181|Apis mellifera complementary sex det...    22   6.6  
DQ325116-1|ABD14130.1|  181|Apis mellifera complementary sex det...    22   6.6  
DQ325114-1|ABD14128.1|  181|Apis mellifera complementary sex det...    22   6.6  
AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellif...    22   6.6  

>AY350618-1|AAQ57660.1|  425|Apis mellifera complementary sex
           determiner protein.
          Length = 425

 Score = 23.4 bits (48), Expect = 2.2
 Identities = 11/31 (35%), Positives = 15/31 (48%)
 Frame = +1

Query: 1   LKRSYHYLLSASYFNNYQTNREGFANSSGNY 93
           L  +Y Y    S +NNY  N   + N + NY
Sbjct: 318 LSNNYKY----SNYNNYNNNYNNYNNYNNNY 344


>EF531707-1|ABP57431.1|  138|Apis mellifera structural cuticle
           protein protein.
          Length = 138

 Score = 22.2 bits (45), Expect = 5.0
 Identities = 9/31 (29%), Positives = 16/31 (51%)
 Frame = +1

Query: 34  SYFNNYQTNREGFANSSGNYRTIRGRKPLVS 126
           +Y NN++T+       SG  + +    P+VS
Sbjct: 41  NYINNFETSNGISHQESGQPKQVDNETPVVS 71


>DQ325121-1|ABD14135.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 21.8 bits (44), Expect = 6.6
 Identities = 9/20 (45%), Positives = 11/20 (55%)
 Frame = +1

Query: 1   LKRSYHYLLSASYFNNYQTN 60
           L  +Y Y    +Y NNY TN
Sbjct: 85  LSNNYKYSNYNNYNNNYNTN 104


>DQ325120-1|ABD14134.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 21.8 bits (44), Expect = 6.6
 Identities = 9/20 (45%), Positives = 11/20 (55%)
 Frame = +1

Query: 1   LKRSYHYLLSASYFNNYQTN 60
           L  +Y Y    +Y NNY TN
Sbjct: 85  LSNNYKYSNYNNYNNNYNTN 104


>DQ325119-1|ABD14133.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 21.8 bits (44), Expect = 6.6
 Identities = 9/20 (45%), Positives = 11/20 (55%)
 Frame = +1

Query: 1   LKRSYHYLLSASYFNNYQTN 60
           L  +Y Y    +Y NNY TN
Sbjct: 85  LSNNYKYSNYNNYNNNYNTN 104


>DQ325118-1|ABD14132.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 21.8 bits (44), Expect = 6.6
 Identities = 9/20 (45%), Positives = 11/20 (55%)
 Frame = +1

Query: 1   LKRSYHYLLSASYFNNYQTN 60
           L  +Y Y    +Y NNY TN
Sbjct: 85  LSNNYKYSNYNNYNNNYNTN 104


>DQ325117-1|ABD14131.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 21.8 bits (44), Expect = 6.6
 Identities = 9/20 (45%), Positives = 11/20 (55%)
 Frame = +1

Query: 1   LKRSYHYLLSASYFNNYQTN 60
           L  +Y Y    +Y NNY TN
Sbjct: 85  LSNNYKYSNYNNYNNNYNTN 104


>DQ325116-1|ABD14130.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 21.8 bits (44), Expect = 6.6
 Identities = 9/20 (45%), Positives = 11/20 (55%)
 Frame = +1

Query: 1   LKRSYHYLLSASYFNNYQTN 60
           L  +Y Y    +Y NNY TN
Sbjct: 85  LSNNYKYSNYNNYNNNYNTN 104


>DQ325114-1|ABD14128.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 21.8 bits (44), Expect = 6.6
 Identities = 9/20 (45%), Positives = 11/20 (55%)
 Frame = +1

Query: 1   LKRSYHYLLSASYFNNYQTN 60
           L  +Y Y    +Y NNY TN
Sbjct: 85  LSNNYKYSNYNNYNNNYNTN 104


>AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellifera
           ORF for hypotheticalprotein. ).
          Length = 998

 Score = 21.8 bits (44), Expect = 6.6
 Identities = 11/34 (32%), Positives = 17/34 (50%)
 Frame = -3

Query: 400 TREATNRIGLLTHEFLLDVLSDLSIVEEVAVFSD 299
           + E+ N  GL    FL +V+SD   + +   F D
Sbjct: 802 SEESINNQGLECLRFLNEVISDFDAILDQNKFKD 835


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 180,687
Number of Sequences: 438
Number of extensions: 3438
Number of successful extensions: 30
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 28
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 30
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22048515
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)