Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0863
         (743 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC126.09 |||vacuolar membrane zinc transporter |Schizosaccharo...    30   0.30 
SPBC2F12.13 |klp5|sot1|kinesin-like protein Klp5|Schizosaccharom...    27   3.7  
SPAC24H6.13 |||DUF221 family protein|Schizosaccharomyces pombe|c...    26   4.9  
SPAC22A12.06c |||serine hydrolase|Schizosaccharomyces pombe|chr ...    26   6.5  

>SPCC126.09 |||vacuolar membrane zinc transporter
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 418

 Score = 30.3 bits (65), Expect = 0.30
 Identities = 14/22 (63%), Positives = 17/22 (77%), Gaps = 2/22 (9%)
 Frame = +3

Query: 471 LFLQLNKP--DCCVLFILTYFL 530
           LFL L+K   DCC LF+LT+FL
Sbjct: 8   LFLHLSKEFYDCCGLFLLTFFL 29


>SPBC2F12.13 |klp5|sot1|kinesin-like protein
           Klp5|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 883

 Score = 26.6 bits (56), Expect = 3.7
 Identities = 11/26 (42%), Positives = 18/26 (69%)
 Frame = -1

Query: 470 KLRKINNYNLSIID*KYFLSCYNNII 393
           K+ K+ +++ SI   KY+LSCY  I+
Sbjct: 477 KVEKVKHFDDSIRVLKYWLSCYERIL 502


>SPAC24H6.13 |||DUF221 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 871

 Score = 26.2 bits (55), Expect = 4.9
 Identities = 8/11 (72%), Positives = 10/11 (90%)
 Frame = +2

Query: 347 NYCKNYYYIFQ 379
           NYC+N+YY FQ
Sbjct: 463 NYCQNWYYAFQ 473


>SPAC22A12.06c |||serine hydrolase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 429

 Score = 25.8 bits (54), Expect = 6.5
 Identities = 10/31 (32%), Positives = 18/31 (58%)
 Frame = -1

Query: 737 DEEKTNARSKKYWFGPNFTNLLYYVEKYKNT 645
           D ++ +  S+   + PNF   L Y+E Y+N+
Sbjct: 303 DGQEPDTYSENVHYTPNFKGALAYLEAYQNS 333


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,821,798
Number of Sequences: 5004
Number of extensions: 54745
Number of successful extensions: 105
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 105
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 105
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 353266144
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)