Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0863
         (743 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g21210.1 68416.m02680 universal stress protein (USP) family p...    29   2.5  
At4g34280.1 68417.m04873 transducin family protein / WD-40 repea...    27   9.9  
At1g34050.1 68414.m04221 ankyrin repeat family protein contains ...    27   9.9  

>At3g21210.1 68416.m02680 universal stress protein (USP) family
           protein / DC1 domain-containing protein contains Pfam
           profiles PF03107: DC1 domain, PF00582: universal stress
           protein family
          Length = 686

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 10/24 (41%), Positives = 16/24 (66%)
 Frame = -3

Query: 681 QFIILCGEI*EHRIFCGYCQ*MLC 610
           +F  +CG++  HR+ CG C+  LC
Sbjct: 551 EFCSICGQLIGHRLNCGECRFALC 574


>At4g34280.1 68417.m04873 transducin family protein / WD-40 repeat
           family protein similar to TUPA (GI:11066216) [Emericella
           nidulans]; similar to damage-specific DNA binding
           protein 2, Homo sapiens ,PIR2:I38909; contains Pfam
           PF00400: WD domain, G-beta repeat (3 copies,1
           weak)|19797453|gb|AU229277.1|AU229277
          Length = 783

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 9/19 (47%), Positives = 15/19 (78%)
 Frame = +2

Query: 311 LNFNVVCKIISLNYCKNYY 367
           LNF +V ++ S+NY ++YY
Sbjct: 663 LNFEIVPRVSSMNYTRSYY 681


>At1g34050.1 68414.m04221 ankyrin repeat family protein contains
           ankyrin repeat domains, Pfam:PF00023
          Length = 573

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 10/26 (38%), Positives = 16/26 (61%)
 Frame = -1

Query: 692 PNFTNLLYYVEKYKNTEFFVVIVSKC 615
           P+  NLL+ V++Y NT     ++S C
Sbjct: 275 PDRNNLLHQVDRYGNTVLHTAVMSSC 300


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,345,906
Number of Sequences: 28952
Number of extensions: 235860
Number of successful extensions: 355
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 350
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 355
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1643603136
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)