Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0862
         (388 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC576.08c |rps2||40S ribosomal protein S2|Schizosaccharomyces ...   141   3e-35
SPAC22E12.07 |rna1||Ran GAP Rna1|Schizosaccharomyces pombe|chr 1...    26   1.8  
SPBC800.02 |whi5|mug54|cell cycle transcriptional repressor Whi5...    26   2.4  
SPAC323.05c |||S-adenosylmethionine-dependent methyltransferase ...    25   4.1  
SPBC3D6.16 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    25   5.5  
SPBC725.11c |php2||CCAAT-binding factor complex subunit Php2 |Sc...    24   7.2  
SPAC15A10.16 |bud6|aip3, fat1, SPAC15E1.01|actin interacting pro...    24   7.2  
SPCC188.11 |prp45|cwf13, snw1, SPCC584.08|transcriptional regula...    24   9.6  
SPAC6F12.05c |tnr3||thiamine diphosphokinase Tnr3 |Schizosacchar...    24   9.6  
SPCC794.11c |||ENTH domain protein Ent3|Schizosaccharomyces pomb...    24   9.6  
SPBC13G1.02 |||mannose-1-phosphate guanyltransferase |Schizosacc...    24   9.6  

>SPCC576.08c |rps2||40S ribosomal protein S2|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 253

 Score =  141 bits (342), Expect = 3e-35
 Identities = 58/83 (69%), Positives = 72/83 (86%)
 Frame = +2

Query: 2   LAKLSVLPVRRGYWGNKIGKPHTVPCKVTGKCGSVTVRLIPAPRGTGIVSAPVPKKLLQM 181
           + KLS++P+RRGYWG  +G PHTVP KV+GKCGSVTVRL+PAPRG G+V+APV K+ LQ+
Sbjct: 130 MGKLSIMPIRRGYWGTALGDPHTVPVKVSGKCGSVTVRLVPAPRGAGLVAAPVTKRFLQL 189

Query: 182 AGVQDCYTSARGSTGTLGNFAKA 250
           AG++DCYT +RGST TLGNF KA
Sbjct: 190 AGIEDCYTQSRGSTKTLGNFVKA 212



 Score = 35.5 bits (78), Expect = 0.003
 Identities = 15/37 (40%), Positives = 22/37 (59%)
 Frame = +1

Query: 229 LGKFC*SHIAAIAKTYAYLTPDLWRDIPLTKSPYSEF 339
           LG F  +  AA + TY  LTP+LW + P  ++P  E+
Sbjct: 206 LGNFVKAAFAAASLTYGILTPNLWAERPFGQTPIEEY 242


>SPAC22E12.07 |rna1||Ran GAP Rna1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 386

 Score = 26.2 bits (55), Expect = 1.8
 Identities = 11/31 (35%), Positives = 18/31 (58%)
 Frame = +2

Query: 173 LQMAGVQDCYTSARGSTGTLGNFAKATSLPL 265
           L+  G+ DC  SARG+   +  F+K  ++ L
Sbjct: 246 LRELGLNDCLLSARGAAAVVDAFSKLENIGL 276


>SPBC800.02 |whi5|mug54|cell cycle transcriptional repressor
           Whi5|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 252

 Score = 25.8 bits (54), Expect = 2.4
 Identities = 13/31 (41%), Positives = 14/31 (45%)
 Frame = +2

Query: 206 SARGSTGTLGNFAKATSLPLPRHMPTSLLTC 298
           S R  T  L    K+TSLP P   P S   C
Sbjct: 204 SLRLGTANLSRIRKSTSLPFPTAYPLSADDC 234


>SPAC323.05c |||S-adenosylmethionine-dependent methyltransferase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 231

 Score = 25.0 bits (52), Expect = 4.1
 Identities = 11/21 (52%), Positives = 13/21 (61%)
 Frame = -2

Query: 279 GICLGNGSDVALAKFPKVPVE 217
           GI LGNG D+ +   P VP E
Sbjct: 117 GIRLGNGVDILIFNPPYVPTE 137


>SPBC3D6.16 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 95

 Score = 24.6 bits (51), Expect = 5.5
 Identities = 10/14 (71%), Positives = 11/14 (78%)
 Frame = +2

Query: 263 LPRHMPTSLLTCGG 304
           LPR +PTSLLT  G
Sbjct: 27  LPRSIPTSLLTAAG 40


>SPBC725.11c |php2||CCAAT-binding factor complex subunit Php2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 334

 Score = 24.2 bits (50), Expect = 7.2
 Identities = 13/52 (25%), Positives = 22/52 (42%)
 Frame = +2

Query: 101 SVTVRLIPAPRGTGIVSAPVPKKLLQMAGVQDCYTSARGSTGTLGNFAKATS 256
           S  + +   P  T   S PVP  +  +       ++   S   LG+FA A++
Sbjct: 168 SGNIAMSGGPTNTASTSGPVPHDMTVLPQTDSNTSNLMSSGSQLGSFATAST 219


>SPAC15A10.16 |bud6|aip3, fat1, SPAC15E1.01|actin interacting
           protein 3 homolog Bud6|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1385

 Score = 24.2 bits (50), Expect = 7.2
 Identities = 14/44 (31%), Positives = 23/44 (52%)
 Frame = -2

Query: 171 SFLGTGADTIPVPRGAGISRTVTEPHLPVTLQGTVCGFPILLPQ 40
           S +  G    P+P+    SRT++ P+ P++        PILLP+
Sbjct: 405 STINDGEVAPPLPQR---SRTISSPNSPLSATVLPSSTPILLPR 445


>SPCC188.11 |prp45|cwf13, snw1, SPCC584.08|transcriptional regulator
           Prp45|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 557

 Score = 23.8 bits (49), Expect = 9.6
 Identities = 9/18 (50%), Positives = 11/18 (61%)
 Frame = +1

Query: 67  HRPLQGHRQVWFRNSPAD 120
           H P  G R+ WF +SP D
Sbjct: 42  HIPPYGQRKGWFPSSPED 59


>SPAC6F12.05c |tnr3||thiamine diphosphokinase Tnr3
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 569

 Score = 23.8 bits (49), Expect = 9.6
 Identities = 21/56 (37%), Positives = 28/56 (50%), Gaps = 6/56 (10%)
 Frame = -1

Query: 187 TSHLKKLLRNWRRHNT--STTRGRNQ-PDCYGTTLAGDLA--RDGVWL-SYLVTPV 38
           T  L K+L +WR +NT     + RN+    YG +    LA  R G WL  +L T V
Sbjct: 82  TDILAKVLEHWRHNNTFGIADQWRNELYTVYGKSKKPVLAVERGGFWLFGFLSTGV 137


>SPCC794.11c |||ENTH domain protein Ent3|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 476

 Score = 23.8 bits (49), Expect = 9.6
 Identities = 12/34 (35%), Positives = 16/34 (47%)
 Frame = +2

Query: 200 YTSARGSTGTLGNFAKATSLPLPRHMPTSLLTCG 301
           YTSA G +  L N +    L L    PT+  + G
Sbjct: 394 YTSAFGMSSGLSNTSSQAGLGLTSQQPTAAKSSG 427


>SPBC13G1.02 |||mannose-1-phosphate guanyltransferase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 414

 Score = 23.8 bits (49), Expect = 9.6
 Identities = 8/12 (66%), Positives = 9/12 (75%)
 Frame = +1

Query: 274 YAYLTPDLWRDI 309
           YAY TP+ WR I
Sbjct: 241 YAYNTPEFWRQI 252


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,734,576
Number of Sequences: 5004
Number of extensions: 35639
Number of successful extensions: 99
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 97
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 99
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 128344734
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)