Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= mg--0862
(388 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_01_0756 + 5819367-5820038,5820847-5821005 157 4e-39
03_06_0386 + 33555682-33556344,33557138-33557299 155 1e-38
07_03_0099 + 13387533-13387641,13387647-13387864,13388497-13388871 84 4e-17
02_02_0591 - 11901947-11901984,11902394-11903786,11903846-11904031 29 0.97
01_02_0110 + 11210174-11210292,11211635-11211752,11212426-112125... 27 3.9
12_02_0387 + 18453328-18453456,18453699-18453836,18454085-184541... 27 5.2
09_04_0272 - 16278136-16278289,16278873-16278970,16279090-162792... 27 5.2
06_01_0510 + 3681369-3681645,3682825-3682886,3683016-3683165,368... 27 5.2
06_01_1066 - 8656108-8657622 27 6.9
11_01_0339 + 2533515-2534021,2534106-2534483 26 9.1
09_01_0091 + 1298829-1298898,1299461-1299535,1299642-1299799,130... 26 9.1
06_03_0596 + 22608835-22610263,22610411-22610531,22610765-226118... 26 9.1
04_04_1063 - 30507734-30508127,30508248-30508447,30508559-30508846 26 9.1
04_04_0754 + 27803143-27803517,27805441-27806832,27806910-278071... 26 9.1
04_03_0986 + 21456241-21456852,21456937-21457110,21457216-21457800 26 9.1
01_02_0091 - 11023912-11024017,11024112-11024185,11024478-110248... 26 9.1
>07_01_0756 + 5819367-5820038,5820847-5821005
Length = 276
Score = 157 bits (380), Expect = 4e-39
Identities = 69/84 (82%), Positives = 79/84 (94%)
Frame = +2
Query: 2 LAKLSVLPVRRGYWGNKIGKPHTVPCKVTGKCGSVTVRLIPAPRGTGIVSAPVPKKLLQM 181
LAKLSV+PVRRGYWGNKIGKPHTVPCKVTGKCGSVTVR++PAPRG+GIV+A VPKK+LQ
Sbjct: 143 LAKLSVVPVRRGYWGNKIGKPHTVPCKVTGKCGSVTVRMVPAPRGSGIVAAHVPKKVLQF 202
Query: 182 AGVQDCYTSARGSTGTLGNFAKAT 253
AG++D +TS+RGST TLGNF KAT
Sbjct: 203 AGIEDVFTSSRGSTKTLGNFVKAT 226
Score = 39.9 bits (89), Expect = 7e-04
Identities = 15/37 (40%), Positives = 22/37 (59%)
Frame = +1
Query: 229 LGKFC*SHIAAIAKTYAYLTPDLWRDIPLTKSPYSEF 339
LG F + + KTY +LTPD WR+ K+P+ E+
Sbjct: 219 LGNFVKATFDCLMKTYGFLTPDFWRETRFIKTPFQEY 255
>03_06_0386 + 33555682-33556344,33557138-33557299
Length = 274
Score = 155 bits (376), Expect = 1e-38
Identities = 68/84 (80%), Positives = 79/84 (94%)
Frame = +2
Query: 2 LAKLSVLPVRRGYWGNKIGKPHTVPCKVTGKCGSVTVRLIPAPRGTGIVSAPVPKKLLQM 181
LAKLSV+PVRRGYWGNKIG+PHTVPCKVTGKCGSVTVR++PAPRG+GIV+A VPKK+LQ
Sbjct: 140 LAKLSVVPVRRGYWGNKIGQPHTVPCKVTGKCGSVTVRMVPAPRGSGIVAARVPKKVLQF 199
Query: 182 AGVQDCYTSARGSTGTLGNFAKAT 253
AG++D +TS+RGST TLGNF KAT
Sbjct: 200 AGIEDVFTSSRGSTKTLGNFVKAT 223
Score = 43.6 bits (98), Expect = 6e-05
Identities = 17/37 (45%), Positives = 22/37 (59%)
Frame = +1
Query: 229 LGKFC*SHIAAIAKTYAYLTPDLWRDIPLTKSPYSEF 339
LG F + + KTY +LTPD WRD KSP+ E+
Sbjct: 216 LGNFVKATFDCLMKTYGFLTPDFWRDTKFVKSPFQEY 252
>07_03_0099 + 13387533-13387641,13387647-13387864,13388497-13388871
Length = 233
Score = 83.8 bits (198), Expect = 4e-17
Identities = 37/63 (58%), Positives = 48/63 (76%)
Frame = +2
Query: 59 KPHTVPCKVTGKCGSVTVRLIPAPRGTGIVSAPVPKKLLQMAGVQDCYTSARGSTGTLGN 238
KPHTV CKV K GSVTVR++ P G+ +V+ VPKK+L+ AG++D +TS+RGST TL N
Sbjct: 47 KPHTVSCKVADKYGSVTVRMMLPPMGSSVVATRVPKKVLKFAGIEDVFTSSRGSTKTLSN 106
Query: 239 FAK 247
F K
Sbjct: 107 FVK 109
>02_02_0591 - 11901947-11901984,11902394-11903786,11903846-11904031
Length = 538
Score = 29.5 bits (63), Expect = 0.97
Identities = 11/38 (28%), Positives = 21/38 (55%)
Frame = -1
Query: 190 YTSHLKKLLRNWRRHNTSTTRGRNQPDCYGTTLAGDLA 77
Y ++++L+++W H+ R + PD G + DLA
Sbjct: 410 YPINVERLIQHWMAHDFIPAREEDNPDMVGKEIFNDLA 447
>01_02_0110 + 11210174-11210292,11211635-11211752,11212426-11212522,
11212991-11213080,11213174-11213280,11213765-11213887,
11214055-11214208,11214582-11214642,11214748-11215103,
11216535-11218056,11218169-11218415
Length = 997
Score = 27.5 bits (58), Expect = 3.9
Identities = 17/42 (40%), Positives = 23/42 (54%)
Frame = +2
Query: 149 SAPVPKKLLQMAGVQDCYTSARGSTGTLGNFAKATSLPLPRH 274
SAP + L++AG Q C T G GT F ++ +LP P H
Sbjct: 887 SAPSEHERLKLAGRQRCQTEVVGFDGT---FIRSYALP-PEH 924
>12_02_0387 +
18453328-18453456,18453699-18453836,18454085-18454144,
18461532-18462591,18463022-18463521
Length = 628
Score = 27.1 bits (57), Expect = 5.2
Identities = 11/26 (42%), Positives = 14/26 (53%)
Frame = +1
Query: 58 KATHRPLQGHRQVWFRNSPADSCPSW 135
K H L G + W+ N PA+S SW
Sbjct: 243 KVIHLALDGIARFWYFNLPANSIYSW 268
>09_04_0272 -
16278136-16278289,16278873-16278970,16279090-16279230,
16279701-16279865,16279941-16280117,16280330-16280510,
16280784-16280829,16281178-16281241,16281331-16281353,
16281964-16282036,16282410-16282541,16283343-16283429,
16283488-16283700
Length = 517
Score = 27.1 bits (57), Expect = 5.2
Identities = 20/62 (32%), Positives = 29/62 (46%)
Frame = +1
Query: 13 VSSTSPKRLLG*QDRKATHRPLQGHRQVWFRNSPADSCPSWYWYCVCASS*EASSDGWCT 192
V+ST+P Q R H PL R +WF P W+++ V A EAS+ +
Sbjct: 37 VTSTNPTNN---QARLPPHDPLGSRRSIWFG-------PPWHFWGVIAEVVEASAREYEE 86
Query: 193 GL 198
G+
Sbjct: 87 GM 88
>06_01_0510 + 3681369-3681645,3682825-3682886,3683016-3683165,
3683776-3683952,3684496-3684711,3684802-3686480,
3686602-3686667,3686753-3686822,3686909-3687547
Length = 1111
Score = 27.1 bits (57), Expect = 5.2
Identities = 11/25 (44%), Positives = 16/25 (64%)
Frame = -2
Query: 258 SDVALAKFPKVPVEPRADV*QSCTP 184
S +L+K K+P+E R D+ CTP
Sbjct: 990 SSFSLSKLDKLPMERRKDLTDPCTP 1014
>06_01_1066 - 8656108-8657622
Length = 504
Score = 26.6 bits (56), Expect = 6.9
Identities = 18/71 (25%), Positives = 33/71 (46%)
Frame = +2
Query: 140 GIVSAPVPKKLLQMAGVQDCYTSARGSTGTLGNFAKATSLPLPRHMPTSLLTCGGISR*L 319
G+++ V + LLQ A + + + T + TS + +PT+L GG++ L
Sbjct: 226 GLIAVEVARNLLQAAAPRGAHALVVSTETTSFSHYAGTSRSML--LPTALFRMGGVAMLL 283
Query: 320 SLHTQSSKSKT 352
S S+ + T
Sbjct: 284 STSRSSATTTT 294
>11_01_0339 + 2533515-2534021,2534106-2534483
Length = 294
Score = 26.2 bits (55), Expect = 9.1
Identities = 11/32 (34%), Positives = 20/32 (62%)
Frame = -2
Query: 303 PPQVRSEVGICLGNGSDVALAKFPKVPVEPRA 208
PP++R+E+G+C S L F + P++ +A
Sbjct: 167 PPRLRNELGVCRVYISTGTLRSFDRRPLDNQA 198
>09_01_0091 +
1298829-1298898,1299461-1299535,1299642-1299799,
1300629-1300979
Length = 217
Score = 26.2 bits (55), Expect = 9.1
Identities = 13/30 (43%), Positives = 18/30 (60%)
Frame = -2
Query: 108 VTEPHLPVTLQGTVCGFPILLPQ*PLRTGR 19
+T P LP + + + FPIL+P LRT R
Sbjct: 167 LTTPSLPPSSEKSPVTFPILVPMRVLRTRR 196
>06_03_0596 +
22608835-22610263,22610411-22610531,22610765-22611864,
22611969-22612327
Length = 1002
Score = 26.2 bits (55), Expect = 9.1
Identities = 15/38 (39%), Positives = 21/38 (55%)
Frame = +2
Query: 227 TLGNFAKATSLPLPRHMPTSLLTCGGISR*LSLHTQSS 340
T+GN K T L L ++P+SL C + SL QS+
Sbjct: 506 TIGNLVKLTDLKLSGNIPSSLGKCVALE---SLEMQSN 540
>04_04_1063 - 30507734-30508127,30508248-30508447,30508559-30508846
Length = 293
Score = 26.2 bits (55), Expect = 9.1
Identities = 16/35 (45%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
Frame = +1
Query: 97 WFRNSPADSC-PSWYWYCVCASS*EASSDGWCTGL 198
+FRN AD C PS Y + VC +SSD + GL
Sbjct: 221 YFRNYTADGCVPSSYAW-VCGQGPASSSDWFDRGL 254
>04_04_0754 +
27803143-27803517,27805441-27806832,27806910-27807164,
27807246-27807368,27807643-27808119,27808217-27808603
Length = 1002
Score = 26.2 bits (55), Expect = 9.1
Identities = 10/22 (45%), Positives = 16/22 (72%)
Frame = -2
Query: 309 DIPPQVRSEVGICLGNGSDVAL 244
D P V ++VG+ +G G+DVA+
Sbjct: 889 DSPALVSADVGLAIGAGTDVAI 910
>04_03_0986 + 21456241-21456852,21456937-21457110,21457216-21457800
Length = 456
Score = 26.2 bits (55), Expect = 9.1
Identities = 11/35 (31%), Positives = 18/35 (51%)
Frame = +2
Query: 35 GYWGNKIGKPHTVPCKVTGKCGSVTVRLIPAPRGT 139
GY N++ T+PC++ + + R PAP T
Sbjct: 420 GYGRNRLVSLDTLPCRLCERASRMGGRHAPAPNAT 454
>01_02_0091 - 11023912-11024017,11024112-11024185,11024478-11024834,
11024938-11025166,11025468-11025559,11026099-11026326,
11027108-11027356,11027429-11027471,11027589-11027836,
11027922-11028035,11028122-11028322,11028417-11028593,
11028725-11028853,11029210-11029287,11029369-11029464,
11029563-11029634,11031549-11031677,11032105-11032220,
11033048-11033204,11033343-11033426,11033513-11033574,
11034901-11035067,11035162-11035226,11035315-11035371,
11035547-11035633,11036638-11036703,11036810-11036908
Length = 1193
Score = 26.2 bits (55), Expect = 9.1
Identities = 18/43 (41%), Positives = 23/43 (53%)
Frame = +2
Query: 116 LIPAPRGTGIVSAPVPKKLLQMAGVQDCYTSARGSTGTLGNFA 244
L PAP IV V ++ M ++D Y SA G T TLG+ A
Sbjct: 1136 LTPAPVFPLIVGVSVIALVISMPRLKDLYQSAVGMT-TLGSAA 1177
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,850,926
Number of Sequences: 37544
Number of extensions: 270918
Number of successful extensions: 772
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 750
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 771
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 648814968
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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