Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= mg--0862
(388 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_4413| Best HMM Match : No HMM Matches (HMM E-Value=.) 170 4e-43
SB_48266| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 1.3
SB_12832| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 1.3
SB_11257| Best HMM Match : GCC2_GCC3 (HMM E-Value=2.7e-11) 29 1.8
SB_22198| Best HMM Match : Borrelia_orfA (HMM E-Value=5.4) 29 1.8
SB_25441| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 2.3
SB_24946| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 2.3
SB_51875| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 3.1
SB_17447| Best HMM Match : zf-B_box (HMM E-Value=0.04) 27 4.0
SB_50559| Best HMM Match : PKD (HMM E-Value=1.9e-06) 27 7.1
SB_6196| Best HMM Match : rve (HMM E-Value=3.7e-12) 26 9.3
SB_37483| Best HMM Match : Drf_FH1 (HMM E-Value=6.6) 26 9.3
SB_32261| Best HMM Match : rve (HMM E-Value=3.2e-14) 26 9.3
>SB_4413| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 252
Score = 170 bits (413), Expect = 4e-43
Identities = 76/84 (90%), Positives = 79/84 (94%)
Frame = +2
Query: 2 LAKLSVLPVRRGYWGNKIGKPHTVPCKVTGKCGSVTVRLIPAPRGTGIVSAPVPKKLLQM 181
LAKLSV+PVRRGYWGNKIGKPHTVPCKVTGKCGS VRLIPAPRGTGIVSAPVPKKLLQM
Sbjct: 105 LAKLSVIPVRRGYWGNKIGKPHTVPCKVTGKCGSTRVRLIPAPRGTGIVSAPVPKKLLQM 164
Query: 182 AGVQDCYTSARGSTGTLGNFAKAT 253
AG++DCYTS RG T TLGNFAKAT
Sbjct: 165 AGIEDCYTSTRGQTATLGNFAKAT 188
Score = 52.4 bits (120), Expect = 1e-07
Identities = 21/37 (56%), Positives = 28/37 (75%)
Frame = +1
Query: 229 LGKFC*SHIAAIAKTYAYLTPDLWRDIPLTKSPYSEF 339
LG F + AAI++TYAYLTPD+W++ TK+PY EF
Sbjct: 181 LGNFAKATFAAISETYAYLTPDMWKETVFTKTPYQEF 217
>SB_48266| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 723
Score = 29.1 bits (62), Expect = 1.3
Identities = 18/75 (24%), Positives = 34/75 (45%)
Frame = +2
Query: 14 SVLPVRRGYWGNKIGKPHTVPCKVTGKCGSVTVRLIPAPRGTGIVSAPVPKKLLQMAGVQ 193
S++ R +G K +P + C V G GS++ RL A G +S+ + + + +
Sbjct: 472 SIISRRSSSFGRKGSRPSCL-CSVAGAQGSISSRLCSAISRQGSISSRLCSAISRQGSIS 530
Query: 194 DCYTSARGSTGTLGN 238
SA G++ +
Sbjct: 531 SRLCSAISRQGSISS 545
>SB_12832| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1169
Score = 29.1 bits (62), Expect = 1.3
Identities = 26/96 (27%), Positives = 40/96 (41%), Gaps = 4/96 (4%)
Frame = +2
Query: 23 PVRRGYWGNKIGKPHTVPCKVTGKCGSVTVRLIPAPRGTGIVSAPVPKKLLQMAGVQDCY 202
P GY+ N + K V C+ KC + + I G P P+ + G+QDC
Sbjct: 212 PCSSGYYANTLRKTACVRCEAGFKCPTTSAAPIACSSGK---KCPFPEGV----GIQDC- 263
Query: 203 TSARGSTGTLGNFAKATSLP----LPRHMPTSLLTC 298
G T ++G A T P PR+ +++ C
Sbjct: 264 --GEG-TYSVGGQATCTDCPKGYACPRNDTDNMIKC 296
>SB_11257| Best HMM Match : GCC2_GCC3 (HMM E-Value=2.7e-11)
Length = 3810
Score = 28.7 bits (61), Expect = 1.8
Identities = 16/42 (38%), Positives = 18/42 (42%), Gaps = 2/42 (4%)
Frame = +2
Query: 20 LPVRRGYWGNKIG--KPHTVPCKVTGKCGSVTVRLIPAPRGT 139
LP GYW N G P PC V C + + P P GT
Sbjct: 3355 LPCPAGYWCNIKGLADPSISPCPVGHYCLNAIDKPTPCPNGT 3396
>SB_22198| Best HMM Match : Borrelia_orfA (HMM E-Value=5.4)
Length = 394
Score = 28.7 bits (61), Expect = 1.8
Identities = 18/50 (36%), Positives = 26/50 (52%)
Frame = -1
Query: 196 ILYTSHLKKLLRNWRRHNTSTTRGRNQPDCYGTTLAGDLARDGVWLSYLV 47
+LYT + + RN++ +NT T R Q + TT+ L D LS LV
Sbjct: 36 LLYTRNSTRTARNYQYYNTRQTLCR-QRETINTTIHAKLYTDSEKLSILV 84
Score = 28.7 bits (61), Expect = 1.8
Identities = 18/50 (36%), Positives = 26/50 (52%)
Frame = -1
Query: 196 ILYTSHLKKLLRNWRRHNTSTTRGRNQPDCYGTTLAGDLARDGVWLSYLV 47
+LYT + + RN++ +NT T R Q + TT+ L D LS LV
Sbjct: 285 LLYTRNSTRTARNYQYYNTRQTLCR-QRETINTTIHAKLYTDSEKLSILV 333
Score = 28.3 bits (60), Expect = 2.3
Identities = 21/58 (36%), Positives = 31/58 (53%), Gaps = 1/58 (1%)
Frame = -1
Query: 217 TTS*RVAI-LYTSHLKKLLRNWRRHNTSTTRGRNQPDCYGTTLAGDLARDGVWLSYLV 47
T S +++I LYT + + RN++ +NT T R Q + TT+ L D LS LV
Sbjct: 136 TDSEKLSIPLYTRNSTRTARNYQYYNTRETLCR-QRETINTTIHAKLYTDSEKLSILV 192
Score = 27.9 bits (59), Expect = 3.1
Identities = 20/58 (34%), Positives = 31/58 (53%), Gaps = 1/58 (1%)
Frame = -1
Query: 217 TTS*RVAIL-YTSHLKKLLRNWRRHNTSTTRGRNQPDCYGTTLAGDLARDGVWLSYLV 47
T S +++IL YT + + RN++ +NT T R Q + TT+ L D LS L+
Sbjct: 183 TDSEKLSILVYTRNSTQTARNYQYYNTRKTL-RRQRETINTTIHAKLYTDSEKLSILL 239
Score = 27.5 bits (58), Expect = 4.0
Identities = 20/57 (35%), Positives = 30/57 (52%), Gaps = 1/57 (1%)
Frame = -1
Query: 217 TTS*RVAIL-YTSHLKKLLRNWRRHNTSTTRGRNQPDCYGTTLAGDLARDGVWLSYL 50
T S +++IL YT + + RN++ +NT T R Q + TT+ L D LS L
Sbjct: 324 TDSEKLSILVYTRNSTQTARNYQYYNTRKTL-RRQRETINTTIHAKLYTDSEKLSIL 379
Score = 26.6 bits (56), Expect = 7.1
Identities = 16/50 (32%), Positives = 25/50 (50%)
Frame = -1
Query: 196 ILYTSHLKKLLRNWRRHNTSTTRGRNQPDCYGTTLAGDLARDGVWLSYLV 47
+LYT + + RN++ +NT T Q + TT+ L D LS L+
Sbjct: 238 LLYTRNSTRTARNYQYYNTRETL-HGQRETINTTIHAKLYTDSEKLSILL 286
>SB_25441| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 932
Score = 28.3 bits (60), Expect = 2.3
Identities = 13/48 (27%), Positives = 24/48 (50%)
Frame = +2
Query: 92 KCGSVTVRLIPAPRGTGIVSAPVPKKLLQMAGVQDCYTSARGSTGTLG 235
+CG+ + + R ++ P+P L ++ +Q C + STGT G
Sbjct: 591 RCGTHALTKTVSERVPDVLKHPLPPPLQELQELQVCDPPSTSSTGTTG 638
>SB_24946| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 822
Score = 28.3 bits (60), Expect = 2.3
Identities = 14/47 (29%), Positives = 23/47 (48%)
Frame = +2
Query: 14 SVLPVRRGYWGNKIGKPHTVPCKVTGKCGSVTVRLIPAPRGTGIVSA 154
+V RG+W + + H + C V +CG + L AP +VS+
Sbjct: 303 TVFTTYRGFWNYALVRKHWLKCVVNLQCG-IAKHLSQAPSNKLLVSS 348
>SB_51875| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 214
Score = 27.9 bits (59), Expect = 3.1
Identities = 15/48 (31%), Positives = 18/48 (37%)
Frame = -2
Query: 198 QSCTPAI*RSFLGTGADTIPVPRGAGISRTVTEPHLPVTLQGTVCGFP 55
+SC PA + G G D G + TEPH QG P
Sbjct: 144 RSCGPAFGDPWFGCGRDLFIADNAGGNKASCTEPHKYARPQGATSDGP 191
>SB_17447| Best HMM Match : zf-B_box (HMM E-Value=0.04)
Length = 1223
Score = 27.5 bits (58), Expect = 4.0
Identities = 21/80 (26%), Positives = 29/80 (36%)
Frame = +2
Query: 56 GKPHTVPCKVTGKCGSVTVRLIPAPRGTGIVSAPVPKKLLQMAGVQDCYTSARGSTGTLG 235
G T+ +G V V L P GTG+ ++ V L GV T+
Sbjct: 811 GNTLTLNAAASGCPQIVRVLLSSGPNGTGLAASSVSSVLTSSTGVPTLINRTPTGLRTVT 870
Query: 236 NFAKATSLPLPRHMPTSLLT 295
N A + +PT L T
Sbjct: 871 NAAPTGLQTVTNAIPTGLRT 890
>SB_50559| Best HMM Match : PKD (HMM E-Value=1.9e-06)
Length = 367
Score = 26.6 bits (56), Expect = 7.1
Identities = 20/55 (36%), Positives = 25/55 (45%), Gaps = 1/55 (1%)
Frame = +2
Query: 197 CYTSARGST-GTLGNFAKATSLPLPRHMPTSLLTCGGISR*LSLHTQSSKSKTVI 358
C+ + T TLG+ K TSL L + LTC +R LS H S VI
Sbjct: 56 CFNNVSSLTVNTLGHVHKRTSLYLSAGPSLTNLTCTQYNRTLSGHCIFSNEMEVI 110
>SB_6196| Best HMM Match : rve (HMM E-Value=3.7e-12)
Length = 444
Score = 26.2 bits (55), Expect = 9.3
Identities = 19/56 (33%), Positives = 26/56 (46%)
Frame = -3
Query: 254 MWL*QNFPRCQLNHELTCSNPVHQPSEEAS*ELAQTQYQYHEGQESAGLLRNHTCR 87
+W+ + C L E SN +A LA Q Q H QE++G +R TCR
Sbjct: 80 VWVAEIVDECILGLEFLVSNNCSVNFVDACLCLAGEQVQLHGVQENSGEIR--TCR 133
>SB_37483| Best HMM Match : Drf_FH1 (HMM E-Value=6.6)
Length = 237
Score = 26.2 bits (55), Expect = 9.3
Identities = 15/44 (34%), Positives = 21/44 (47%), Gaps = 2/44 (4%)
Frame = +2
Query: 62 PHTVPCKVTGKC--GSVTVRLIPAPRGTGIVSAPVPKKLLQMAG 187
P T P T G+VTV P+P T I + P +L ++G
Sbjct: 171 PQTPPSPSTNASAGGTVTVMATPSPLLTDITAGATPAPVLPLSG 214
>SB_32261| Best HMM Match : rve (HMM E-Value=3.2e-14)
Length = 628
Score = 26.2 bits (55), Expect = 9.3
Identities = 11/26 (42%), Positives = 15/26 (57%)
Frame = +3
Query: 159 FLRSFFRWLVYRIATRQLVVQLAPWE 236
F SF+RWL R++ Q +LA E
Sbjct: 489 FAESFYRWLAQRLSRAQYSKELASGE 514
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,612,051
Number of Sequences: 59808
Number of extensions: 284305
Number of successful extensions: 663
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 629
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 663
length of database: 16,821,457
effective HSP length: 74
effective length of database: 12,395,665
effective search space used: 669365910
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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