Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0862
         (388 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U42436-10|AAF99899.1|  272|Caenorhabditis elegans Ribosomal prot...   163   3e-41
Z81053-4|CAB02879.1|  418|Caenorhabditis elegans Hypothetical pr...    30   0.65 
Z78063-7|CAB01506.1|  418|Caenorhabditis elegans Hypothetical pr...    30   0.65 
U80447-10|AAB37814.1|  477|Caenorhabditis elegans Hypothetical p...    29   1.1  
U67954-8|AAB52608.2|  782|Caenorhabditis elegans Sulfate permeas...    29   1.1  
AY954524-1|AAX34432.2|  762|Caenorhabditis elegans anion transpo...    29   1.1  
AY887909-1|AAX34421.1|  782|Caenorhabditis elegans anion transpo...    29   1.1  
Z81560-2|CAB04547.1| 1021|Caenorhabditis elegans Hypothetical pr...    27   4.6  
Z81082-1|CAB03094.2|  291|Caenorhabditis elegans Hypothetical pr...    26   8.1  
AC006794-1|AAK68504.1|  407|Caenorhabditis elegans Hypothetical ...    26   8.1  

>U42436-10|AAF99899.1|  272|Caenorhabditis elegans Ribosomal
           protein, small subunitprotein 2 protein.
          Length = 272

 Score =  163 bits (397), Expect = 3e-41
 Identities = 74/89 (83%), Positives = 80/89 (89%)
 Frame = +2

Query: 5   AKLSVLPVRRGYWGNKIGKPHTVPCKVTGKCGSVTVRLIPAPRGTGIVSAPVPKKLLQMA 184
           AKL+V+PVRRGYWGNKIG PHTVPCKVTGKC SV VRLIPAPRGTGIVSAPVPKKLL MA
Sbjct: 154 AKLAVVPVRRGYWGNKIGLPHTVPCKVTGKCASVMVRLIPAPRGTGIVSAPVPKKLLHMA 213

Query: 185 GVQDCYTSARGSTGTLGNFAKATSLPLPR 271
           G++DCYT+A+GST TLGNFAKAT   L R
Sbjct: 214 GIEDCYTAAKGSTATLGNFAKATYAALQR 242



 Score = 46.0 bits (104), Expect = 9e-06
 Identities = 19/34 (55%), Positives = 25/34 (73%)
 Frame = +1

Query: 229 LGKFC*SHIAAIAKTYAYLTPDLWRDIPLTKSPY 330
           LG F  +  AA+ +TY+YLTPDLW++  L KSPY
Sbjct: 229 LGNFAKATYAALQRTYSYLTPDLWKEEALEKSPY 262


>Z81053-4|CAB02879.1|  418|Caenorhabditis elegans Hypothetical
           protein E02A10.1 protein.
          Length = 418

 Score = 29.9 bits (64), Expect = 0.65
 Identities = 14/44 (31%), Positives = 21/44 (47%)
 Frame = +2

Query: 92  KCGSVTVRLIPAPRGTGIVSAPVPKKLLQMAGVQDCYTSARGST 223
           +C +  V     PRG G+   P   K+ +  G++D Y    GST
Sbjct: 215 ECRNTRVFAQRRPRGFGLTCHPRLIKICEAIGIKDIYVKVEGST 258


>Z78063-7|CAB01506.1|  418|Caenorhabditis elegans Hypothetical
           protein E02A10.1 protein.
          Length = 418

 Score = 29.9 bits (64), Expect = 0.65
 Identities = 14/44 (31%), Positives = 21/44 (47%)
 Frame = +2

Query: 92  KCGSVTVRLIPAPRGTGIVSAPVPKKLLQMAGVQDCYTSARGST 223
           +C +  V     PRG G+   P   K+ +  G++D Y    GST
Sbjct: 215 ECRNTRVFAQRRPRGFGLTCHPRLIKICEAIGIKDIYVKVEGST 258


>U80447-10|AAB37814.1|  477|Caenorhabditis elegans Hypothetical
           protein F55F8.9 protein.
          Length = 477

 Score = 29.1 bits (62), Expect = 1.1
 Identities = 14/35 (40%), Positives = 22/35 (62%)
 Frame = -1

Query: 184 SHLKKLLRNWRRHNTSTTRGRNQPDCYGTTLAGDL 80
           +H K + +N RR+    +R +N+   YG+TL GDL
Sbjct: 218 THKKIVFKN-RRYGRRISRNQNRFSSYGSTLNGDL 251


>U67954-8|AAB52608.2|  782|Caenorhabditis elegans Sulfate permease
           family protein 3 protein.
          Length = 782

 Score = 29.1 bits (62), Expect = 1.1
 Identities = 20/58 (34%), Positives = 26/58 (44%), Gaps = 3/58 (5%)
 Frame = -1

Query: 265 QWQRC---GFSKISQGAS*TTS*RVAILYTSHLKKLLRNWRRHNTSTTRGRNQPDCYG 101
           +W+RC    F  I Q      S R A ++ S LK   R W+R   S  R +   DC G
Sbjct: 583 KWERCKSESFVTIEQ----MNSDRSADIFDSKLKSARRRWKRDQKSENRCKLVIDCDG 636


>AY954524-1|AAX34432.2|  762|Caenorhabditis elegans anion
           transporter SULP-3b protein.
          Length = 762

 Score = 29.1 bits (62), Expect = 1.1
 Identities = 20/58 (34%), Positives = 26/58 (44%), Gaps = 3/58 (5%)
 Frame = -1

Query: 265 QWQRC---GFSKISQGAS*TTS*RVAILYTSHLKKLLRNWRRHNTSTTRGRNQPDCYG 101
           +W+RC    F  I Q      S R A ++ S LK   R W+R   S  R +   DC G
Sbjct: 563 KWERCKSESFVTIEQ----MNSDRSADIFDSKLKSARRRWKRDQKSENRCKLVIDCDG 616


>AY887909-1|AAX34421.1|  782|Caenorhabditis elegans anion
           transporter SULP-3a protein.
          Length = 782

 Score = 29.1 bits (62), Expect = 1.1
 Identities = 20/58 (34%), Positives = 26/58 (44%), Gaps = 3/58 (5%)
 Frame = -1

Query: 265 QWQRC---GFSKISQGAS*TTS*RVAILYTSHLKKLLRNWRRHNTSTTRGRNQPDCYG 101
           +W+RC    F  I Q      S R A ++ S LK   R W+R   S  R +   DC G
Sbjct: 583 KWERCKSESFVTIEQ----MNSDRSADIFDSKLKSARRRWKRDQKSENRCKLVIDCDG 636


>Z81560-2|CAB04547.1| 1021|Caenorhabditis elegans Hypothetical
           protein K02E2.2 protein.
          Length = 1021

 Score = 27.1 bits (57), Expect = 4.6
 Identities = 14/45 (31%), Positives = 20/45 (44%)
 Frame = -3

Query: 320 LVSGISLHKSGVR*AYVLAMAAMWL*QNFPRCQLNHELTCSNPVH 186
           L+  +S  KSG R   +         +  PRC +  EL C  P+H
Sbjct: 570 LIKKLSFFKSGPRVGDLTPTGLCRRRRRSPRCAIWRELVCVYPIH 614


>Z81082-1|CAB03094.2|  291|Caenorhabditis elegans Hypothetical
           protein F42G4.5 protein.
          Length = 291

 Score = 26.2 bits (55), Expect = 8.1
 Identities = 9/27 (33%), Positives = 16/27 (59%)
 Frame = -2

Query: 309 DIPPQVRSEVGICLGNGSDVALAKFPK 229
           DIP  +R+++ ICLG     +  ++ K
Sbjct: 230 DIPTSLRTKIDICLGKSPSTSKPRYQK 256


>AC006794-1|AAK68504.1|  407|Caenorhabditis elegans Hypothetical
           protein Y50D4A.3 protein.
          Length = 407

 Score = 26.2 bits (55), Expect = 8.1
 Identities = 8/17 (47%), Positives = 13/17 (76%)
 Frame = +2

Query: 35  GYWGNKIGKPHTVPCKV 85
           GY+G+ +G  HT+ CK+
Sbjct: 310 GYFGSPVGPEHTLSCKM 326


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,676,950
Number of Sequences: 27780
Number of extensions: 208651
Number of successful extensions: 612
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 601
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 612
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 576961812
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)