Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0862
         (388 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ288392-1|ABC41342.1|  120|Apis mellifera nanos protein.              22   2.8  
DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.       22   2.8  
AF388659-3|AAK71993.1|  548|Apis mellifera 1D-myo-inositol-trisp...    22   2.8  
AF388659-2|AAK71994.1|  463|Apis mellifera 1D-myo-inositol-trisp...    22   2.8  
AF388659-1|AAK71995.1|  782|Apis mellifera 1D-myo-inositol-trisp...    22   2.8  
DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholi...    21   3.7  
EF493864-1|ABP65286.1|  247|Apis mellifera triosephoshpate isome...    21   4.9  
EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.     21   6.5  
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    20   8.6  
AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase pro...    20   8.6  

>DQ288392-1|ABC41342.1|  120|Apis mellifera nanos protein.
          Length = 120

 Score = 21.8 bits (44), Expect = 2.8
 Identities = 7/21 (33%), Positives = 11/21 (52%)
 Frame = +2

Query: 77  CKVTGKCGSVTVRLIPAPRGT 139
           C + G CG +   +   P+GT
Sbjct: 75  CPICGACGDIAHTVKYCPKGT 95


>DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.
          Length = 630

 Score = 21.8 bits (44), Expect = 2.8
 Identities = 10/21 (47%), Positives = 12/21 (57%)
 Frame = +2

Query: 194 DCYTSARGSTGTLGNFAKATS 256
           D Y    G TG +GN  +ATS
Sbjct: 533 DEYVHRIGRTGRVGNRGRATS 553


>AF388659-3|AAK71993.1|  548|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform C protein.
          Length = 548

 Score = 21.8 bits (44), Expect = 2.8
 Identities = 7/11 (63%), Positives = 10/11 (90%)
 Frame = +2

Query: 248 ATSLPLPRHMP 280
           A +LPLP+H+P
Sbjct: 501 AKTLPLPQHLP 511


>AF388659-2|AAK71994.1|  463|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform B protein.
          Length = 463

 Score = 21.8 bits (44), Expect = 2.8
 Identities = 7/11 (63%), Positives = 10/11 (90%)
 Frame = +2

Query: 248 ATSLPLPRHMP 280
           A +LPLP+H+P
Sbjct: 416 AKTLPLPQHLP 426


>AF388659-1|AAK71995.1|  782|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform A protein.
          Length = 782

 Score = 21.8 bits (44), Expect = 2.8
 Identities = 7/11 (63%), Positives = 10/11 (90%)
 Frame = +2

Query: 248 ATSLPLPRHMP 280
           A +LPLP+H+P
Sbjct: 735 AKTLPLPQHLP 745


>DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholine
           receptor beta1subunit protein.
          Length = 520

 Score = 21.4 bits (43), Expect = 3.7
 Identities = 7/9 (77%), Positives = 9/9 (100%)
 Frame = +2

Query: 263 LPRHMPTSL 289
           LP+H+PTSL
Sbjct: 379 LPKHLPTSL 387


>EF493864-1|ABP65286.1|  247|Apis mellifera triosephoshpate
           isomerase protein.
          Length = 247

 Score = 21.0 bits (42), Expect = 4.9
 Identities = 10/32 (31%), Positives = 14/32 (43%)
 Frame = -1

Query: 166 LRNWRRHNTSTTRGRNQPDCYGTTLAGDLARD 71
           LRNW   N + T        YG ++    A+D
Sbjct: 187 LRNWFSKNVNQTVAETVRIIYGGSVTAGNAKD 218


>EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.
          Length = 570

 Score = 20.6 bits (41), Expect = 6.5
 Identities = 12/49 (24%), Positives = 20/49 (40%)
 Frame = -3

Query: 161 ELAQTQYQYHEGQESAGLLRNHTCR*PCKGRCVAFLSCYPSNLFGLVEL 15
           E   T   + E  E  G +R+H     CK   ++ +      L+ L E+
Sbjct: 108 EWGTTNLTFEEDPEPFGRVRDHNISALCKELGISVVQKVSHTLYKLDEI 156


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 20.2 bits (40), Expect = 8.6
 Identities = 8/14 (57%), Positives = 10/14 (71%)
 Frame = +1

Query: 331 SEFKV*DSHCITTE 372
           SE K  + HC+TTE
Sbjct: 814 SEEKNINDHCVTTE 827


>AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase
           protein.
          Length = 588

 Score = 20.2 bits (40), Expect = 8.6
 Identities = 4/13 (30%), Positives = 9/13 (69%)
 Frame = +1

Query: 97  WFRNSPADSCPSW 135
           W + +P ++ P+W
Sbjct: 343 WIKGTPQNNVPNW 355


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 114,929
Number of Sequences: 438
Number of extensions: 2408
Number of successful extensions: 10
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used:  9391092
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)