Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= mg--0862
(388 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At2g41840.1 68415.m05171 40S ribosomal protein S2 (RPS2C) 156 6e-39
At1g59359.1 68414.m06677 40S ribosomal protein S2 (RPS2B) simila... 156 6e-39
At1g58983.1 68414.m06666 40S ribosomal protein S2, putative simi... 156 6e-39
At1g58684.1 68414.m06657 40S ribosomal protein S2, putative 156 6e-39
At1g58380.1 68414.m06642 40S ribosomal protein S2 (RPS2A) simila... 156 6e-39
At3g57490.1 68416.m06400 40S ribosomal protein S2 (RPS2D) 40S ri... 155 7e-39
At2g33800.1 68415.m04147 ribosomal protein S5 family protein con... 44 4e-05
At1g28210.2 68414.m03463 DNAJ heat shock protein, putative stron... 29 0.82
At1g28210.1 68414.m03462 DNAJ heat shock protein, putative stron... 29 0.82
At2g04050.1 68415.m00386 MATE efflux family protein similar to r... 28 2.5
At1g64880.1 68414.m07355 ribosomal protein S5 family protein con... 28 2.5
At4g03740.1 68417.m00513 hypothetical protein 27 3.3
At3g13090.1 68416.m01639 ABC transporter, putative similar to MR... 27 5.8
At5g49770.1 68418.m06164 leucine-rich repeat transmembrane prote... 26 7.6
At1g72390.1 68414.m08373 expressed protein 26 7.6
>At2g41840.1 68415.m05171 40S ribosomal protein S2 (RPS2C)
Length = 285
Score = 156 bits (378), Expect = 6e-39
Identities = 69/84 (82%), Positives = 78/84 (92%)
Frame = +2
Query: 2 LAKLSVLPVRRGYWGNKIGKPHTVPCKVTGKCGSVTVRLIPAPRGTGIVSAPVPKKLLQM 181
LAKLSV+PVRRGYWGNKIGKPHTVPCKVTGKCGSVTVR++PAPRG+GIV+A VPKK+LQ
Sbjct: 151 LAKLSVVPVRRGYWGNKIGKPHTVPCKVTGKCGSVTVRMVPAPRGSGIVAARVPKKVLQF 210
Query: 182 AGVQDCYTSARGSTGTLGNFAKAT 253
AG+ D +TS+RGST TLGNF KAT
Sbjct: 211 AGIDDVFTSSRGSTKTLGNFVKAT 234
Score = 38.3 bits (85), Expect = 0.002
Identities = 14/36 (38%), Positives = 22/36 (61%)
Frame = +1
Query: 229 LGKFC*SHIAAIAKTYAYLTPDLWRDIPLTKSPYSE 336
LG F + + KTY +LTP+ W++ ++SPY E
Sbjct: 227 LGNFVKATFDCLQKTYGFLTPEFWKETRFSRSPYQE 262
>At1g59359.1 68414.m06677 40S ribosomal protein S2 (RPS2B) similar
to ribosomal protein S2 GI:430711 from [Drosophila
melanogaster]
Length = 284
Score = 156 bits (378), Expect = 6e-39
Identities = 69/84 (82%), Positives = 78/84 (92%)
Frame = +2
Query: 2 LAKLSVLPVRRGYWGNKIGKPHTVPCKVTGKCGSVTVRLIPAPRGTGIVSAPVPKKLLQM 181
LAKLSV+PVRRGYWGNKIGKPHTVPCKVTGKCGSVTVR++PAPRG+GIV+A VPKK+LQ
Sbjct: 150 LAKLSVVPVRRGYWGNKIGKPHTVPCKVTGKCGSVTVRMVPAPRGSGIVAARVPKKVLQF 209
Query: 182 AGVQDCYTSARGSTGTLGNFAKAT 253
AG+ D +TS+RGST TLGNF KAT
Sbjct: 210 AGIDDVFTSSRGSTKTLGNFVKAT 233
Score = 38.3 bits (85), Expect = 0.002
Identities = 14/36 (38%), Positives = 22/36 (61%)
Frame = +1
Query: 229 LGKFC*SHIAAIAKTYAYLTPDLWRDIPLTKSPYSE 336
LG F + + KTY +LTP+ W++ ++SPY E
Sbjct: 226 LGNFVKATFDCLQKTYGFLTPEFWKETRFSRSPYQE 261
>At1g58983.1 68414.m06666 40S ribosomal protein S2, putative similar
to ribosomal protein S2 GI:939717 from [Urechis caupo]
Length = 284
Score = 156 bits (378), Expect = 6e-39
Identities = 69/84 (82%), Positives = 78/84 (92%)
Frame = +2
Query: 2 LAKLSVLPVRRGYWGNKIGKPHTVPCKVTGKCGSVTVRLIPAPRGTGIVSAPVPKKLLQM 181
LAKLSV+PVRRGYWGNKIGKPHTVPCKVTGKCGSVTVR++PAPRG+GIV+A VPKK+LQ
Sbjct: 150 LAKLSVVPVRRGYWGNKIGKPHTVPCKVTGKCGSVTVRMVPAPRGSGIVAARVPKKVLQF 209
Query: 182 AGVQDCYTSARGSTGTLGNFAKAT 253
AG+ D +TS+RGST TLGNF KAT
Sbjct: 210 AGIDDVFTSSRGSTKTLGNFVKAT 233
Score = 38.3 bits (85), Expect = 0.002
Identities = 14/36 (38%), Positives = 22/36 (61%)
Frame = +1
Query: 229 LGKFC*SHIAAIAKTYAYLTPDLWRDIPLTKSPYSE 336
LG F + + KTY +LTP+ W++ ++SPY E
Sbjct: 226 LGNFVKATFDCLQKTYGFLTPEFWKETRFSRSPYQE 261
>At1g58684.1 68414.m06657 40S ribosomal protein S2, putative
Length = 284
Score = 156 bits (378), Expect = 6e-39
Identities = 69/84 (82%), Positives = 78/84 (92%)
Frame = +2
Query: 2 LAKLSVLPVRRGYWGNKIGKPHTVPCKVTGKCGSVTVRLIPAPRGTGIVSAPVPKKLLQM 181
LAKLSV+PVRRGYWGNKIGKPHTVPCKVTGKCGSVTVR++PAPRG+GIV+A VPKK+LQ
Sbjct: 150 LAKLSVVPVRRGYWGNKIGKPHTVPCKVTGKCGSVTVRMVPAPRGSGIVAARVPKKVLQF 209
Query: 182 AGVQDCYTSARGSTGTLGNFAKAT 253
AG+ D +TS+RGST TLGNF KAT
Sbjct: 210 AGIDDVFTSSRGSTKTLGNFVKAT 233
Score = 38.3 bits (85), Expect = 0.002
Identities = 14/36 (38%), Positives = 22/36 (61%)
Frame = +1
Query: 229 LGKFC*SHIAAIAKTYAYLTPDLWRDIPLTKSPYSE 336
LG F + + KTY +LTP+ W++ ++SPY E
Sbjct: 226 LGNFVKATFDCLQKTYGFLTPEFWKETRFSRSPYQE 261
>At1g58380.1 68414.m06642 40S ribosomal protein S2 (RPS2A) similar
to ribosomal protein S2 GI:939717 from (Urechis caupo)
Length = 284
Score = 156 bits (378), Expect = 6e-39
Identities = 69/84 (82%), Positives = 78/84 (92%)
Frame = +2
Query: 2 LAKLSVLPVRRGYWGNKIGKPHTVPCKVTGKCGSVTVRLIPAPRGTGIVSAPVPKKLLQM 181
LAKLSV+PVRRGYWGNKIGKPHTVPCKVTGKCGSVTVR++PAPRG+GIV+A VPKK+LQ
Sbjct: 150 LAKLSVVPVRRGYWGNKIGKPHTVPCKVTGKCGSVTVRMVPAPRGSGIVAARVPKKVLQF 209
Query: 182 AGVQDCYTSARGSTGTLGNFAKAT 253
AG+ D +TS+RGST TLGNF KAT
Sbjct: 210 AGIDDVFTSSRGSTKTLGNFVKAT 233
Score = 38.3 bits (85), Expect = 0.002
Identities = 14/36 (38%), Positives = 22/36 (61%)
Frame = +1
Query: 229 LGKFC*SHIAAIAKTYAYLTPDLWRDIPLTKSPYSE 336
LG F + + KTY +LTP+ W++ ++SPY E
Sbjct: 226 LGNFVKATFDCLQKTYGFLTPEFWKETRFSRSPYQE 261
>At3g57490.1 68416.m06400 40S ribosomal protein S2 (RPS2D) 40S
ribosomal protein S2 - Arabidopsis thaliana,
SWISSPROT:RS2_ARATH
Length = 276
Score = 155 bits (377), Expect = 7e-39
Identities = 68/84 (80%), Positives = 78/84 (92%)
Frame = +2
Query: 2 LAKLSVLPVRRGYWGNKIGKPHTVPCKVTGKCGSVTVRLIPAPRGTGIVSAPVPKKLLQM 181
LAKLSV+P+RRGYWGNKIGKPHTVPCKVTGKCGSVTVR++PAPRG+GIV+A VPKK+LQ
Sbjct: 142 LAKLSVVPIRRGYWGNKIGKPHTVPCKVTGKCGSVTVRMVPAPRGSGIVAARVPKKVLQF 201
Query: 182 AGVQDCYTSARGSTGTLGNFAKAT 253
AG+ D +TS+RGST TLGNF KAT
Sbjct: 202 AGIDDVFTSSRGSTKTLGNFVKAT 225
Score = 39.5 bits (88), Expect = 8e-04
Identities = 15/36 (41%), Positives = 22/36 (61%)
Frame = +1
Query: 229 LGKFC*SHIAAIAKTYAYLTPDLWRDIPLTKSPYSE 336
LG F + + KTY +LTP+ W++ +KSPY E
Sbjct: 218 LGNFVKATFDCLQKTYGFLTPEFWKETRFSKSPYQE 253
>At2g33800.1 68415.m04147 ribosomal protein S5 family protein
contains Pfam profiles PF03719: Ribosomal protein S5,
C-terminal domain, PF00333: Ribosomal protein S5,
N-terminal domain
Length = 303
Score = 44.0 bits (99), Expect = 4e-05
Identities = 27/80 (33%), Positives = 40/80 (50%)
Frame = +2
Query: 14 SVLPVRRGYWGNKIGKPHTVPCKVTGKCGSVTVRLIPAPRGTGIVSAPVPKKLLQMAGVQ 193
S + RR + K T P + G G+ V L PA GTG+++ + +L+MAGV+
Sbjct: 199 SAIDARRNIVQVPMTKYSTFPHRSEGDYGAAKVMLRPASPGTGVIAGGAVRIVLEMAGVE 258
Query: 194 DCYTSARGSTGTLGNFAKAT 253
+ GS L N A+AT
Sbjct: 259 NALGKQLGSNNALNN-ARAT 277
>At1g28210.2 68414.m03463 DNAJ heat shock protein, putative strong
similarity to mitochondrial DnaJ protein (AtJ1)
GI:564030 from [Arabidopsis thaliana]; contains Pfam
profiles PF00226: DnaJ domain, PF01556: DnaJ C terminal
region, PF00684: DnaJ central domain (4 repeats);
identical to cDNA DnaJ homolog AtJ1 (atj) GI:564029
Length = 427
Score = 29.5 bits (63), Expect = 0.82
Identities = 24/86 (27%), Positives = 36/86 (41%)
Frame = +2
Query: 5 AKLSVLPVRRGYWGNKIGKPHTVPCKVTGKCGSVTVRLIPAPRGTGIVSAPVPKKLLQMA 184
A +S+ P RG G P T C+ G + + RG+GIV +L+
Sbjct: 198 AAMSICPTCRGV-GRVTIPPFTASCQTCKGTGHIIKEYCMSCRGSGIVEGTKTAELVIPG 256
Query: 185 GVQDCYTSARGSTGTLGNFAKATSLP 262
GV+ + A + GN + TS P
Sbjct: 257 GVE---SEATITIVGAGNVSSRTSQP 279
>At1g28210.1 68414.m03462 DNAJ heat shock protein, putative strong
similarity to mitochondrial DnaJ protein (AtJ1)
GI:564030 from [Arabidopsis thaliana]; contains Pfam
profiles PF00226: DnaJ domain, PF01556: DnaJ C terminal
region, PF00684: DnaJ central domain (4 repeats);
identical to cDNA DnaJ homolog AtJ1 (atj) GI:564029
Length = 408
Score = 29.5 bits (63), Expect = 0.82
Identities = 24/86 (27%), Positives = 36/86 (41%)
Frame = +2
Query: 5 AKLSVLPVRRGYWGNKIGKPHTVPCKVTGKCGSVTVRLIPAPRGTGIVSAPVPKKLLQMA 184
A +S+ P RG G P T C+ G + + RG+GIV +L+
Sbjct: 198 AAMSICPTCRGV-GRVTIPPFTASCQTCKGTGHIIKEYCMSCRGSGIVEGTKTAELVIPG 256
Query: 185 GVQDCYTSARGSTGTLGNFAKATSLP 262
GV+ + A + GN + TS P
Sbjct: 257 GVE---SEATITIVGAGNVSSRTSQP 279
>At2g04050.1 68415.m00386 MATE efflux family protein similar to
ripening regulated protein DDTFR18 [Lycopersicon
esculentum] GI:12231296; contains Pfam profile: PF01554
uncharacterized membrane protein family
Length = 476
Score = 27.9 bits (59), Expect = 2.5
Identities = 12/18 (66%), Positives = 12/18 (66%)
Frame = +2
Query: 65 HTVPCKVTGKCGSVTVRL 118
H VPCK T K G VTV L
Sbjct: 11 HLVPCKDTWKSGQVTVEL 28
>At1g64880.1 68414.m07355 ribosomal protein S5 family protein
contains similarity to 30S ribosomal protein S5
GI:6969105 from [Campylobacter jejuni]
Length = 515
Score = 27.9 bits (59), Expect = 2.5
Identities = 18/62 (29%), Positives = 29/62 (46%)
Frame = +2
Query: 65 HTVPCKVTGKCGSVTVRLIPAPRGTGIVSAPVPKKLLQMAGVQDCYTSARGSTGTLGNFA 244
HT+ + + L PAP TG+ + V K +L +AG ++ + GS + N
Sbjct: 427 HTIAHAIQTSYKKTKLYLWPAPTTTGMKAGRVVKTILLLAGFKNIKSKVIGSRNSY-NTV 485
Query: 245 KA 250
KA
Sbjct: 486 KA 487
>At4g03740.1 68417.m00513 hypothetical protein
Length = 345
Score = 27.5 bits (58), Expect = 3.3
Identities = 8/23 (34%), Positives = 13/23 (56%)
Frame = +1
Query: 79 QGHRQVWFRNSPADSCPSWYWYC 147
+ ++++WFR SCP W C
Sbjct: 60 RNNQEIWFRTFALGSCPHTLWPC 82
>At3g13090.1 68416.m01639 ABC transporter, putative similar to
MRP-like ABC transporter [Arabidopsis thaliana]
GI:2316016; contains Pfam profile: PF00005 ABC
transporter
Length = 1466
Score = 26.6 bits (56), Expect = 5.8
Identities = 9/15 (60%), Positives = 10/15 (66%)
Frame = -2
Query: 99 PHLPVTLQGTVCGFP 55
PHLP+ L G C FP
Sbjct: 1230 PHLPMVLHGLTCTFP 1244
>At5g49770.1 68418.m06164 leucine-rich repeat transmembrane protein
kinase, putative
Length = 946
Score = 26.2 bits (55), Expect = 7.6
Identities = 12/38 (31%), Positives = 19/38 (50%)
Frame = +2
Query: 146 VSAPVPKKLLQMAGVQDCYTSARGSTGTLGNFAKATSL 259
+S +P L + +Q+ + S TG+L N TSL
Sbjct: 257 LSGDIPSSLNNLTNLQELHLSDNKFTGSLPNLTSLTSL 294
>At1g72390.1 68414.m08373 expressed protein
Length = 1088
Score = 26.2 bits (55), Expect = 7.6
Identities = 14/38 (36%), Positives = 19/38 (50%), Gaps = 1/38 (2%)
Frame = -3
Query: 224 QLNHELTCSNPVHQPSEE-AS*ELAQTQYQYHEGQESA 114
QL H+ P+ QPS++ A Q Q Q HE + A
Sbjct: 938 QLQHQQQLQQPMSQPSQQLAQSPQQQQQLQQHEQPQQA 975
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,282,011
Number of Sequences: 28952
Number of extensions: 202327
Number of successful extensions: 545
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 529
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 545
length of database: 12,070,560
effective HSP length: 73
effective length of database: 9,957,064
effective search space used: 547638520
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -