Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0861
         (692 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_43527| Best HMM Match : Trypsin (HMM E-Value=0)                     34   0.095
SB_1799| Best HMM Match : zf-C2H2 (HMM E-Value=0)                      31   1.2  
SB_26948| Best HMM Match : LIM (HMM E-Value=2.3e-39)                   30   1.5  
SB_13096| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.6  
SB_42487| Best HMM Match : Extensin_2 (HMM E-Value=0.084)              28   6.2  
SB_48258| Best HMM Match : Kelch_1 (HMM E-Value=0)                     28   8.3  

>SB_43527| Best HMM Match : Trypsin (HMM E-Value=0)
          Length = 366

 Score = 34.3 bits (75), Expect = 0.095
 Identities = 20/70 (28%), Positives = 31/70 (44%)
 Frame = +3

Query: 471 GNYRSRRQCI*RHLHKLELIVTNKENCREQYKGHDRVVTDNKFCAGLVRAGGRDYDNTDL 650
           G  +  R  +   LH+  + + + + CR+ +   D +VT N FCAG   +   D    D 
Sbjct: 253 GKRKLWRDRVANRLHEATVPIVDIQTCRKAHP--DYIVTANMFCAGFENSSRGDACQGDS 310

Query: 651 GAPAFFQNAL 680
           G P    N L
Sbjct: 311 GGPFSVDNPL 320



 Score = 29.9 bits (64), Expect = 2.0
 Identities = 8/24 (33%), Positives = 17/24 (70%)
 Frame = +1

Query: 319 HPEFSEENYDKDVSIVRVTHAIHF 390
           HP +S ++YD D++++R+   + F
Sbjct: 199 HPHYSPDSYDSDIALIRLAQPVTF 222


>SB_1799| Best HMM Match : zf-C2H2 (HMM E-Value=0)
          Length = 907

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 16/32 (50%), Positives = 19/32 (59%), Gaps = 2/32 (6%)
 Frame = -3

Query: 663 RQGHPSQYCRSRGHQPGPNRR--RICYQSRRD 574
           RQG P +YCRS   Q GP RR  R  Y  +R+
Sbjct: 338 RQGTPDEYCRSSVKQIGPFRRFERRGYSKKRN 369


>SB_26948| Best HMM Match : LIM (HMM E-Value=2.3e-39)
          Length = 351

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 14/43 (32%), Positives = 23/43 (53%)
 Frame = -3

Query: 684 LLAHFGRRQGHPSQYCRSRGHQPGPNRRRICYQSRRDHDPCTV 556
           L+ H G R  +PS+ C +      P  +++ YQS+  HD C +
Sbjct: 162 LICH-GCRGINPSKVCAACNGDFAPGEKKVGYQSKTFHDKCFI 203


>SB_13096| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1465

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 16/49 (32%), Positives = 22/49 (44%)
 Frame = +3

Query: 531  VTNKENCREQYKGHDRVVTDNKFCAGLVRAGGRDYDNTDLGAPAFFQNA 677
            V N   C++ Y+     VT N  CAG  +   RD  N D G    F ++
Sbjct: 1321 VVNHNACKKAYENETWPVTSNMLCAG-YKNKSRDSCNRDSGGGFVFYDS 1368


>SB_42487| Best HMM Match : Extensin_2 (HMM E-Value=0.084)
          Length = 635

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 14/26 (53%), Positives = 17/26 (65%), Gaps = 1/26 (3%)
 Frame = +1

Query: 211 YLFPWR-ILRSCIPSHIAGSSRRSEP 285
           Y FP R I ++CI  H AGS+RR  P
Sbjct: 394 YTFPSRGISKTCIAFHPAGSNRRVHP 419


>SB_48258| Best HMM Match : Kelch_1 (HMM E-Value=0)
          Length = 473

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 14/41 (34%), Positives = 22/41 (53%)
 Frame = +2

Query: 113 SLVQIEVFLPILNQWFQQCAGIVLTNYHYLSTATCFHGEFY 235
           +LV +E + P  N+W ++    +LT   Y STA    G+ Y
Sbjct: 111 NLVSMERYDPSTNEWEEEAVAPMLTARKYFSTAV-LDGKLY 150


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,005,222
Number of Sequences: 59808
Number of extensions: 579076
Number of successful extensions: 1425
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1288
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1424
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1805522550
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)