Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= mg--0861
(692 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g18640.2 68414.m02324 3-phosphoserine phosphatase (PSP) nearl... 32 0.41
At1g18640.1 68414.m02323 3-phosphoserine phosphatase (PSP) nearl... 32 0.41
At1g30450.3 68414.m03722 cation-chloride cotransporter, putative... 30 1.3
At1g30450.2 68414.m03721 cation-chloride cotransporter, putative... 30 1.3
At1g30450.1 68414.m03720 cation-chloride cotransporter, putative... 30 1.3
At5g25170.1 68418.m02984 expressed protein 28 5.1
At5g20480.1 68418.m02434 leucine-rich repeat transmembrane prote... 27 8.9
At4g33600.1 68417.m04773 expressed protein 27 8.9
At2g47820.1 68415.m05968 expressed protein 27 8.9
At1g72050.2 68414.m08328 zinc finger (C2H2 type) family protein ... 27 8.9
At1g72050.1 68414.m08329 zinc finger (C2H2 type) family protein ... 27 8.9
>At1g18640.2 68414.m02324 3-phosphoserine phosphatase (PSP) nearly
identical to 3-phosphoserine phosphatase GI:3759177 from
[Arabidopsis thaliana]
Length = 295
Score = 31.9 bits (69), Expect = 0.41
Identities = 10/35 (28%), Positives = 22/35 (62%)
Frame = -3
Query: 450 NTLGYYDTLLDNSTLLDVWAEVDGMCYSYDAHILV 346
+TLG+ ++ + +LD+W V+ +C+ D+ + V
Sbjct: 62 STLGHEGNIVPSKEILDLWRSVEAVCFDVDSTVCV 96
>At1g18640.1 68414.m02323 3-phosphoserine phosphatase (PSP) nearly
identical to 3-phosphoserine phosphatase GI:3759177 from
[Arabidopsis thaliana]
Length = 295
Score = 31.9 bits (69), Expect = 0.41
Identities = 10/35 (28%), Positives = 22/35 (62%)
Frame = -3
Query: 450 NTLGYYDTLLDNSTLLDVWAEVDGMCYSYDAHILV 346
+TLG+ ++ + +LD+W V+ +C+ D+ + V
Sbjct: 62 STLGHEGNIVPSKEILDLWRSVEAVCFDVDSTVCV 96
>At1g30450.3 68414.m03722 cation-chloride cotransporter, putative
similar to cation-chloride co-transporter GB:AAC49874
GI:2582381 from [Nicotiana tabacum], Cation-Chloride
Cotransporter (CCC) Family Member, PMID:11500563
Length = 975
Score = 30.3 bits (65), Expect = 1.3
Identities = 11/23 (47%), Positives = 14/23 (60%)
Frame = -1
Query: 206 LKGSGSW*EQYQRTVGTIDSRWV 138
+KG W +YQR GTID W+
Sbjct: 767 IKGLDEWPNEYQRQYGTIDLYWI 789
>At1g30450.2 68414.m03721 cation-chloride cotransporter, putative
similar to cation-chloride co-transporter GB:AAC49874
GI:2582381 from [Nicotiana tabacum], Cation-Chloride
Cotransporter (CCC) Family Member, PMID:11500563
Length = 975
Score = 30.3 bits (65), Expect = 1.3
Identities = 11/23 (47%), Positives = 14/23 (60%)
Frame = -1
Query: 206 LKGSGSW*EQYQRTVGTIDSRWV 138
+KG W +YQR GTID W+
Sbjct: 767 IKGLDEWPNEYQRQYGTIDLYWI 789
>At1g30450.1 68414.m03720 cation-chloride cotransporter, putative
similar to cation-chloride co-transporter GB:AAC49874
GI:2582381 from [Nicotiana tabacum], Cation-Chloride
Cotransporter (CCC) Family Member, PMID:11500563
Length = 975
Score = 30.3 bits (65), Expect = 1.3
Identities = 11/23 (47%), Positives = 14/23 (60%)
Frame = -1
Query: 206 LKGSGSW*EQYQRTVGTIDSRWV 138
+KG W +YQR GTID W+
Sbjct: 767 IKGLDEWPNEYQRQYGTIDLYWI 789
>At5g25170.1 68418.m02984 expressed protein
Length = 218
Score = 28.3 bits (60), Expect = 5.1
Identities = 12/26 (46%), Positives = 16/26 (61%)
Frame = +2
Query: 593 QILRRFGPGWWPRLRQY*LGCPCLLP 670
Q+ RR P W RL ++ L C C+LP
Sbjct: 127 QLTRRSIPSWVNRLARFGLFCNCVLP 152
>At5g20480.1 68418.m02434 leucine-rich repeat transmembrane protein
kinase, putative protein kinase Xa21, Oryza sativa,
PIR:A57676
Length = 1031
Score = 27.5 bits (58), Expect = 8.9
Identities = 21/83 (25%), Positives = 38/83 (45%), Gaps = 7/83 (8%)
Frame = +2
Query: 203 STATCFHGEFYDPAYRRISLDLPVAVSPVKYLMFTLLL-------TIPNSLRRITTRM*A 361
+ A C E+ D Y R+ +LP +++ + + +L L TIP+ + + +
Sbjct: 339 AVANCTQLEYLDVGYNRLGGELPASIANLSTTLTSLFLGQNLISGTIPHDIGNLVSLQEL 398
Query: 362 SYE*HMPSTSAQTSSRVLLSNKV 430
S E +M S S LL+ +V
Sbjct: 399 SLETNMLSGELPVSFGKLLNLQV 421
>At4g33600.1 68417.m04773 expressed protein
Length = 453
Score = 27.5 bits (58), Expect = 8.9
Identities = 13/31 (41%), Positives = 15/31 (48%)
Frame = +1
Query: 145 LESMVPTVRWYCSHQLPLPFNCYLFPWRILR 237
L +MVP V W HQ P L+ W LR
Sbjct: 183 LSAMVPFVAWSLRHQCENPQRWVLYHWGELR 213
>At2g47820.1 68415.m05968 expressed protein
Length = 805
Score = 27.5 bits (58), Expect = 8.9
Identities = 14/46 (30%), Positives = 22/46 (47%)
Frame = +2
Query: 137 LPILNQWFQQCAGIVLTNYHYLSTATCFHGEFYDPAYRRISLDLPV 274
LP + +Q ++LT L TCFH E P + ++ LP+
Sbjct: 36 LPRVGDQYQADLPVLLTESDRLKLITCFHSE--PPLQKLLTFGLPI 79
>At1g72050.2 68414.m08328 zinc finger (C2H2 type) family protein
contains multiple zinc finger domains: PF00096: Zinc
finger, C2H2 type
Length = 412
Score = 27.5 bits (58), Expect = 8.9
Identities = 21/62 (33%), Positives = 29/62 (46%), Gaps = 2/62 (3%)
Frame = +3
Query: 474 NYRSRRQCI*RHL--HKLELIVTNKENCREQYKGHDRVVTDNKFCAGLVRAGGRDYDNTD 647
+YR R+ + RHL HK +L KENC+ ++ V + RD DNT
Sbjct: 104 SYR-RKDHLNRHLLTHKGKLFKCPKENCKSEFSVQGNV---GRHVKKYHSNDNRDKDNTG 159
Query: 648 LG 653
LG
Sbjct: 160 LG 161
>At1g72050.1 68414.m08329 zinc finger (C2H2 type) family protein
contains multiple zinc finger domains: PF00096: Zinc
finger, C2H2 type
Length = 324
Score = 27.5 bits (58), Expect = 8.9
Identities = 21/62 (33%), Positives = 29/62 (46%), Gaps = 2/62 (3%)
Frame = +3
Query: 474 NYRSRRQCI*RHL--HKLELIVTNKENCREQYKGHDRVVTDNKFCAGLVRAGGRDYDNTD 647
+YR R+ + RHL HK +L KENC+ ++ V + RD DNT
Sbjct: 16 SYR-RKDHLNRHLLTHKGKLFKCPKENCKSEFSVQGNV---GRHVKKYHSNDNRDKDNTG 71
Query: 648 LG 653
LG
Sbjct: 72 LG 73
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,324,840
Number of Sequences: 28952
Number of extensions: 369643
Number of successful extensions: 983
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 956
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 983
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1477286152
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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