Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0860
         (565 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain |Schizosaccha...    31   0.088
SPCC1840.02c |bgs4|orb11, cwg1|1,3-beta-glucan synthase subunit ...    30   0.20 
SPAC24C9.07c |bgs2|meu21, pgs2|1,3-beta-glucan synthase subunit ...    28   0.82 
SPAC644.04 |pct1||RNA 5'-triphosphatase|Schizosaccharomyces pomb...    27   2.5  

>SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 4196

 Score = 31.5 bits (68), Expect = 0.088
 Identities = 15/26 (57%), Positives = 16/26 (61%)
 Frame = -3

Query: 152  KKYMILHTILSENMYLYHTINYPSLL 75
            K YM L T+L E  YLY   N PSLL
Sbjct: 1571 KTYMHLVTLLKERSYLYKVSNIPSLL 1596


>SPCC1840.02c |bgs4|orb11, cwg1|1,3-beta-glucan synthase subunit
            Bgs4|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1955

 Score = 30.3 bits (65), Expect = 0.20
 Identities = 18/46 (39%), Positives = 25/46 (54%)
 Frame = +3

Query: 384  NEEMQLPFYRGVECYIENIRSSDDFKAWELCGKLNQIPKEFRTLLT 521
            N+ M LPFYRG   YI+ I ++ D    E C K+  +  EF  + T
Sbjct: 1148 NQNMSLPFYRGE--YIQLIDANQD-NYLEECLKIRSVLAEFEEMET 1190


>SPAC24C9.07c |bgs2|meu21, pgs2|1,3-beta-glucan synthase subunit
            Bgs2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1894

 Score = 28.3 bits (60), Expect = 0.82
 Identities = 17/41 (41%), Positives = 23/41 (56%)
 Frame = +3

Query: 384  NEEMQLPFYRGVECYIENIRSSDDFKAWELCGKLNQIPKEF 506
            N+ + LPFYRG   YI+ I ++ D    E C K+  I  EF
Sbjct: 1124 NQNLSLPFYRGE--YIQLIDANQD-NYLEECLKIRSILAEF 1161


>SPAC644.04 |pct1||RNA 5'-triphosphatase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 303

 Score = 26.6 bits (56), Expect = 2.5
 Identities = 10/32 (31%), Positives = 20/32 (62%)
 Frame = +3

Query: 348 NIAFLHHLSEVINEEMQLPFYRGVECYIENIR 443
           NIA L   ++   + M+ P +R V+ +++N+R
Sbjct: 265 NIADLRDRAQKAKDGMEAPLFRRVQLFMDNVR 296


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,368,612
Number of Sequences: 5004
Number of extensions: 49760
Number of successful extensions: 118
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 115
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 118
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 238029836
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)