Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0860
         (565 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_04_0393 + 17185845-17186042,17189342-17189534,17190513-171905...    29   2.6  
09_04_0497 - 18096299-18096496,18096586-18096675,18096809-180969...    29   3.4  
08_02_1073 - 24117834-24118037,24118122-24118211,24118299-241184...    29   3.4  
04_04_1595 + 34678134-34678223,34678309-34678511,34679924-34680227     29   3.4  
02_02_0007 + 6056281-6057024,6057273-6057539,6057622-6057765,605...    27   7.8  
01_06_0061 - 26071984-26072343,26072792-26073139,26073228-260733...    27   7.8  

>11_04_0393 +
           17185845-17186042,17189342-17189534,17190513-17190598,
           17191123-17191254,17191930-17192094,17192397-17192687
          Length = 354

 Score = 29.1 bits (62), Expect = 2.6
 Identities = 24/80 (30%), Positives = 34/80 (42%)
 Frame = +1

Query: 244 DLSGC*CIFVLYFSLILFKVQKGHFQ*RSRIVWQGILHFYTICLKLLMKKCSYRFTEVLN 423
           DL+    ++  YF+L   K  +G+    S +   G +    +      K    RF E L 
Sbjct: 160 DLNFWGAVYPTYFALPYLKASRGNIVVTSSVA--GRVPTARMSFYNASKGAVIRFYETLR 217

Query: 424 AILKTFVLQTILKPGNYVEN 483
           A L + V  TIL PG  V N
Sbjct: 218 AELGSHVRVTILTPGYVVSN 237


>09_04_0497 -
           18096299-18096496,18096586-18096675,18096809-18096914,
           18097005-18097179,18097263-18097365,18097458-18097712,
           18097791-18097868,18097986-18098078,18098179-18098319,
           18098406-18098510,18098658-18098738,18098825-18098866,
           18098966-18099082,18099208-18099351,18099485-18099568,
           18099683-18099803,18099863-18099988,18100106-18100179,
           18100388-18100657
          Length = 800

 Score = 28.7 bits (61), Expect = 3.4
 Identities = 10/38 (26%), Positives = 23/38 (60%)
 Frame = +3

Query: 345 RNIAFLHHLSEVINEEMQLPFYRGVECYIENIRSSDDF 458
           R++ ++  ++ + NEE+  P  + +  Y++ +  SDDF
Sbjct: 394 RSVLYIPGMAPLSNEEIMNPKTKNIRLYVKRVFISDDF 431


>08_02_1073 -
           24117834-24118037,24118122-24118211,24118299-24118404,
           24118477-24118648,24118737-24118839,24118927-24119181,
           24119259-24119336,24119449-24119541,24119660-24119800,
           24119882-24119986,24120135-24120212,24120297-24120341,
           24120463-24120579,24120685-24120828,24120934-24121017,
           24121139-24121232,24121322-24121447,24121585-24121658,
           24121870-24122098,24123124-24123611,24123702-24123749,
           24123841-24124077,24124368-24124404,24125011-24125018
          Length = 1051

 Score = 28.7 bits (61), Expect = 3.4
 Identities = 10/38 (26%), Positives = 23/38 (60%)
 Frame = +3

Query: 345 RNIAFLHHLSEVINEEMQLPFYRGVECYIENIRSSDDF 458
           R++ ++  ++ + NEE+  P  + +  Y++ +  SDDF
Sbjct: 644 RSVLYIPGMAPLSNEEIMNPKTKNIRLYVKRVFISDDF 681


>04_04_1595 + 34678134-34678223,34678309-34678511,34679924-34680227
          Length = 198

 Score = 28.7 bits (61), Expect = 3.4
 Identities = 15/33 (45%), Positives = 22/33 (66%), Gaps = 1/33 (3%)
 Frame = +2

Query: 269 LCYILA*YCSKYRK-ATFSEDQG*SGKEYCIFT 364
           L ++LA    K R  ATFSED   SG++YC+++
Sbjct: 16  LAFVLAIGAEKRRSTATFSEDT--SGRQYCVYS 46


>02_02_0007 +
           6056281-6057024,6057273-6057539,6057622-6057765,
           6057844-6058191,6058713-6059102
          Length = 630

 Score = 27.5 bits (58), Expect = 7.8
 Identities = 14/35 (40%), Positives = 20/35 (57%)
 Frame = +3

Query: 258 LMYICVIF*LDIVQSTERPLSVKIKDSLARNIAFL 362
           LM+ C++F   I++ T+  L V  K S A  I FL
Sbjct: 106 LMFFCILFNYTILRDTKDVLVVTAKGSSAEIIPFL 140


>01_06_0061 -
           26071984-26072343,26072792-26073139,26073228-26073371,
           26073454-26073723,26075019-26075825
          Length = 642

 Score = 27.5 bits (58), Expect = 7.8
 Identities = 14/35 (40%), Positives = 20/35 (57%)
 Frame = +3

Query: 258 LMYICVIF*LDIVQSTERPLSVKIKDSLARNIAFL 362
           LM+ C++F   I++ T+  L V  K S A  I FL
Sbjct: 127 LMFFCILFNYTILRDTKDVLVVTAKGSSAEIIPFL 161


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,115,660
Number of Sequences: 37544
Number of extensions: 239282
Number of successful extensions: 395
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 390
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 395
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1293275844
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)