Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0860
         (565 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_37661| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.5  
SB_1652| Best HMM Match : Keratin_B2 (HMM E-Value=0.031)               29   3.5  
SB_40651| Best HMM Match : Neuromodulin (HMM E-Value=1.2)              28   4.6  
SB_3052| Best HMM Match : Peptidase_S8 (HMM E-Value=0)                 28   4.6  
SB_52232| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.1  
SB_40823| Best HMM Match : rve (HMM E-Value=1.4e-12)                   28   6.1  
SB_13671| Best HMM Match : RVT_1 (HMM E-Value=1.8e-11)                 28   6.1  
SB_8862| Best HMM Match : rve (HMM E-Value=3.3e-12)                    28   6.1  

>SB_37661| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 397

 Score = 28.7 bits (61), Expect = 3.5
 Identities = 11/21 (52%), Positives = 15/21 (71%)
 Frame = -3

Query: 176 NKLNVFFMKKYMILHTILSEN 114
           NK ++FF  KYM L T++S N
Sbjct: 106 NKSDLFFYAKYMFLRTVMSTN 126


>SB_1652| Best HMM Match : Keratin_B2 (HMM E-Value=0.031)
          Length = 563

 Score = 28.7 bits (61), Expect = 3.5
 Identities = 7/23 (30%), Positives = 15/23 (65%)
 Frame = -1

Query: 127 YYLKICTYIIQ*ITQACLLPCCI 59
           Y +K+C  ++  +   C++PCC+
Sbjct: 446 YCVKLCCVVLHCVVLCCVVPCCV 468


>SB_40651| Best HMM Match : Neuromodulin (HMM E-Value=1.2)
          Length = 1156

 Score = 28.3 bits (60), Expect = 4.6
 Identities = 15/34 (44%), Positives = 21/34 (61%), Gaps = 3/34 (8%)
 Frame = +3

Query: 411  RGVECYI-ENI--RSSDDFKAWELCGKLNQIPKE 503
            +G E Y  EN+  R S+D K WE+ G+ +Q  KE
Sbjct: 1015 KGTEIYQGENLSNRGSEDLKYWEIVGERDQANKE 1048


>SB_3052| Best HMM Match : Peptidase_S8 (HMM E-Value=0)
          Length = 1124

 Score = 28.3 bits (60), Expect = 4.6
 Identities = 9/21 (42%), Positives = 14/21 (66%)
 Frame = +1

Query: 1   GECLTNYLGLQQNTIDEKVKY 63
           G+C+ N+  + QN ID+K  Y
Sbjct: 494 GDCVLNHFKISQNAIDQKASY 514


>SB_52232| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 929

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 18/43 (41%), Positives = 24/43 (55%), Gaps = 3/43 (6%)
 Frame = +3

Query: 369 LSEVINEEMQLP--FYRGVEC-YIENIRSSDDFKAWELCGKLN 488
           + EV  +E Q P   Y+ +E  YIE I+SS+  K  E C  LN
Sbjct: 176 IREVELQEQQDPNNLYKEIESLYIEEIKSSNKIKCVEQCLSLN 218


>SB_40823| Best HMM Match : rve (HMM E-Value=1.4e-12)
          Length = 651

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 18/43 (41%), Positives = 24/43 (55%), Gaps = 3/43 (6%)
 Frame = +3

Query: 369 LSEVINEEMQLP--FYRGVEC-YIENIRSSDDFKAWELCGKLN 488
           + EV  +E Q P   Y+ +E  YIE I+SS+  K  E C  LN
Sbjct: 3   IREVELQEQQDPNNLYKEIESLYIEEIKSSNKIKCVEQCLSLN 45


>SB_13671| Best HMM Match : RVT_1 (HMM E-Value=1.8e-11)
          Length = 1702

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 18/43 (41%), Positives = 24/43 (55%), Gaps = 3/43 (6%)
 Frame = +3

Query: 369  LSEVINEEMQLP--FYRGVEC-YIENIRSSDDFKAWELCGKLN 488
            + EV  +E Q P   Y+ +E  YIE I+SS+  K  E C  LN
Sbjct: 917  IREVELQEQQDPNNLYKEIESLYIEEIKSSNKIKCVEQCLSLN 959


>SB_8862| Best HMM Match : rve (HMM E-Value=3.3e-12)
          Length = 1358

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 18/43 (41%), Positives = 24/43 (55%), Gaps = 3/43 (6%)
 Frame = +3

Query: 369 LSEVINEEMQLP--FYRGVEC-YIENIRSSDDFKAWELCGKLN 488
           + EV  +E Q P   Y+ +E  YIE I+SS+  K  E C  LN
Sbjct: 367 IREVELQEQQDPNNLYKEIESLYIEEIKSSNKIKCVEQCLSLN 409


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,223,360
Number of Sequences: 59808
Number of extensions: 312568
Number of successful extensions: 578
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 549
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 578
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1325051197
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)