Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0860
         (565 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z79757-8|CAB02128.2|  355|Caenorhabditis elegans Hypothetical pr...    27   7.0  
Z73909-2|CAD36493.1|  921|Caenorhabditis elegans Hypothetical pr...    27   9.3  
Z73909-1|CAA98133.2| 1009|Caenorhabditis elegans Hypothetical pr...    27   9.3  
Z73907-2|CAA98125.2| 1009|Caenorhabditis elegans Hypothetical pr...    27   9.3  
Z73906-15|CAD36486.1|  921|Caenorhabditis elegans Hypothetical p...    27   9.3  
Z73906-14|CAA98122.2| 1009|Caenorhabditis elegans Hypothetical p...    27   9.3  
AF324832-1|AAL82897.1| 1009|Caenorhabditis elegans AEX-1 protein.      27   9.3  

>Z79757-8|CAB02128.2|  355|Caenorhabditis elegans Hypothetical
           protein F55B12.7 protein.
          Length = 355

 Score = 27.5 bits (58), Expect = 7.0
 Identities = 10/28 (35%), Positives = 18/28 (64%)
 Frame = +2

Query: 188 TKLVFVKKY*FFALLFPTMIYQVANVYL 271
           ++L+F KKY FF     +++  + N+YL
Sbjct: 33  SELIFAKKYSFFLSFQTSLLGSICNIYL 60


>Z73909-2|CAD36493.1|  921|Caenorhabditis elegans Hypothetical
           protein D2030.10b protein.
          Length = 921

 Score = 27.1 bits (57), Expect = 9.3
 Identities = 13/32 (40%), Positives = 21/32 (65%), Gaps = 2/32 (6%)
 Frame = +3

Query: 138 YHIFFHKKNIKFV--ICFKLNWFLLKSINFSL 227
           Y+IFFH+ +I ++     KL+ +L +SI  SL
Sbjct: 390 YYIFFHQFDINYIGAAMLKLDKYLAESIQISL 421


>Z73909-1|CAA98133.2| 1009|Caenorhabditis elegans Hypothetical
           protein D2030.10a protein.
          Length = 1009

 Score = 27.1 bits (57), Expect = 9.3
 Identities = 13/32 (40%), Positives = 21/32 (65%), Gaps = 2/32 (6%)
 Frame = +3

Query: 138 YHIFFHKKNIKFV--ICFKLNWFLLKSINFSL 227
           Y+IFFH+ +I ++     KL+ +L +SI  SL
Sbjct: 390 YYIFFHQFDINYIGAAMLKLDKYLAESIQISL 421


>Z73907-2|CAA98125.2| 1009|Caenorhabditis elegans Hypothetical
           protein D2030.10a protein.
          Length = 1009

 Score = 27.1 bits (57), Expect = 9.3
 Identities = 13/32 (40%), Positives = 21/32 (65%), Gaps = 2/32 (6%)
 Frame = +3

Query: 138 YHIFFHKKNIKFV--ICFKLNWFLLKSINFSL 227
           Y+IFFH+ +I ++     KL+ +L +SI  SL
Sbjct: 390 YYIFFHQFDINYIGAAMLKLDKYLAESIQISL 421


>Z73906-15|CAD36486.1|  921|Caenorhabditis elegans Hypothetical
           protein D2030.10b protein.
          Length = 921

 Score = 27.1 bits (57), Expect = 9.3
 Identities = 13/32 (40%), Positives = 21/32 (65%), Gaps = 2/32 (6%)
 Frame = +3

Query: 138 YHIFFHKKNIKFV--ICFKLNWFLLKSINFSL 227
           Y+IFFH+ +I ++     KL+ +L +SI  SL
Sbjct: 390 YYIFFHQFDINYIGAAMLKLDKYLAESIQISL 421


>Z73906-14|CAA98122.2| 1009|Caenorhabditis elegans Hypothetical
           protein D2030.10a protein.
          Length = 1009

 Score = 27.1 bits (57), Expect = 9.3
 Identities = 13/32 (40%), Positives = 21/32 (65%), Gaps = 2/32 (6%)
 Frame = +3

Query: 138 YHIFFHKKNIKFV--ICFKLNWFLLKSINFSL 227
           Y+IFFH+ +I ++     KL+ +L +SI  SL
Sbjct: 390 YYIFFHQFDINYIGAAMLKLDKYLAESIQISL 421


>AF324832-1|AAL82897.1| 1009|Caenorhabditis elegans AEX-1 protein.
          Length = 1009

 Score = 27.1 bits (57), Expect = 9.3
 Identities = 13/32 (40%), Positives = 21/32 (65%), Gaps = 2/32 (6%)
 Frame = +3

Query: 138 YHIFFHKKNIKFV--ICFKLNWFLLKSINFSL 227
           Y+IFFH+ +I ++     KL+ +L +SI  SL
Sbjct: 390 YYIFFHQFDINYIGAAMLKLDKYLAESIQISL 421


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,733,932
Number of Sequences: 27780
Number of extensions: 264579
Number of successful extensions: 478
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 465
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 477
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1166125180
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)