Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0860
         (565 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g80300.1 68414.m09401 chloroplast ADP, ATP carrier protein 1 ...    27   6.5  
At1g15500.1 68414.m01865 chloroplast ADP, ATP carrier protein, p...    27   6.5  
At5g53390.1 68418.m06634 expressed protein                             27   8.7  

>At1g80300.1 68414.m09401 chloroplast ADP, ATP carrier protein 1 /
           ADP, ATP translocase 1 / adenine nucleotide translocase
           1 (AATP1) identical to SP|Q39002 Chloroplast ADP,ATP
           carrier protein 1, chloroplast precursor (ADP/ATP
           translocase 1) (Adenine nucleotide translocase 1)
           {Arabidopsis thaliana}
          Length = 624

 Score = 27.5 bits (58), Expect = 6.5
 Identities = 14/35 (40%), Positives = 20/35 (57%)
 Frame = +3

Query: 258 LMYICVIF*LDIVQSTERPLSVKIKDSLARNIAFL 362
           LM+ C++F   I++ T+  L V  K S A  I FL
Sbjct: 121 LMFFCILFNYTILRDTKDVLVVTAKGSSAEIIPFL 155


>At1g15500.1 68414.m01865 chloroplast ADP, ATP carrier protein,
           putative / ADP, ATP translocase, putative / adenine
           nucleotide translocase, putative strong similarity to
           SP|Q39002 Chloroplast ADP,ATP carrier protein 1,
           chloroplast precursor (ADP/ATP translocase 1) (Adenine
           nucleotide translocase 1) {Arabidopsis thaliana};
           contains Pfam profile PF03219: TLC ATP/ADP transporter
          Length = 618

 Score = 27.5 bits (58), Expect = 6.5
 Identities = 14/35 (40%), Positives = 20/35 (57%)
 Frame = +3

Query: 258 LMYICVIF*LDIVQSTERPLSVKIKDSLARNIAFL 362
           LM+ C++F   I++ T+  L V  K S A  I FL
Sbjct: 118 LMFFCILFNYTILRDTKDVLVVTAKGSSAEIIPFL 152


>At5g53390.1 68418.m06634 expressed protein
          Length = 486

 Score = 27.1 bits (57), Expect = 8.7
 Identities = 18/63 (28%), Positives = 28/63 (44%)
 Frame = +3

Query: 183 FKLNWFLLKSINFSLYYFLQ*FIRLLMYICVIF*LDIVQSTERPLSVKIKDSLARNIAFL 362
           F   W+L   + F L      F+ +LM+   IF   +++ TE PL  K    L     F+
Sbjct: 188 FNKIWWLFVGLWFILRLLFNTFVDILMFALTIF---VLRDTETPLLAKPGSELIPK-RFV 243

Query: 363 HHL 371
           H +
Sbjct: 244 HRI 246


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,509,627
Number of Sequences: 28952
Number of extensions: 223898
Number of successful extensions: 379
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 376
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 379
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1082538160
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)