Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0859
         (428 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC16E8.07c |vph1||V-type ATPase subunit a|Schizosaccharomyces ...    27   0.93 
SPBC1861.03 |mak10||NatC N-acetyltransferase complex subunit Mak...    25   5.0  
SPCC1442.05c |||conserved fungal protein|Schizosaccharomyces pom...    25   5.0  
SPAC29A4.19c |||P-type ATPase |Schizosaccharomyces pombe|chr 1||...    25   5.0  
SPBC25H2.13c |cdc20|pol2|DNA polymerase epsilon catalytic subuni...    24   8.7  
SPCC576.05 |||nucear export factor|Schizosaccharomyces pombe|chr...    24   8.7  
SPAC3F10.06c |||initiator methionine tRNA 2'-O-ribosyl phosphate...    24   8.7  

>SPAC16E8.07c |vph1||V-type ATPase subunit a|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 805

 Score = 27.5 bits (58), Expect = 0.93
 Identities = 13/26 (50%), Positives = 16/26 (61%)
 Frame = -3

Query: 78  LVFLNSYFFKLGFIV*RSQNTFCWFL 1
           L+F+NSY  KL  I+     TFC FL
Sbjct: 517 LLFMNSYKMKLSIILGVIHMTFCLFL 542


>SPBC1861.03 |mak10||NatC N-acetyltransferase complex subunit Mak10
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 708

 Score = 25.0 bits (52), Expect = 5.0
 Identities = 14/41 (34%), Positives = 19/41 (46%)
 Frame = +1

Query: 277 KTTKNPPCLISTVKSGFFEPPLFIMIIIHI*YLKNNLYSCL 399
           K T     LI+ +KSGF +        +   YLKN L  C+
Sbjct: 635 KFTAAKNSLINVIKSGFEQNEFINPYFLQTNYLKNLLCCCI 675


>SPCC1442.05c |||conserved fungal protein|Schizosaccharomyces
          pombe|chr 3|||Manual
          Length = 177

 Score = 25.0 bits (52), Expect = 5.0
 Identities = 9/22 (40%), Positives = 15/22 (68%)
 Frame = -3

Query: 66 NSYFFKLGFIV*RSQNTFCWFL 1
          +S F  LG++  +++N F WFL
Sbjct: 32 SSIFHALGYVGLKTENAFGWFL 53


>SPAC29A4.19c |||P-type ATPase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1096

 Score = 25.0 bits (52), Expect = 5.0
 Identities = 9/16 (56%), Positives = 13/16 (81%)
 Frame = +1

Query: 280 TTKNPPCLISTVKSGF 327
           +T + PCLIS V++GF
Sbjct: 352 STPSTPCLISVVRTGF 367


>SPBC25H2.13c |cdc20|pol2|DNA polymerase epsilon catalytic subunit a
            Pol2 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2199

 Score = 24.2 bits (50), Expect = 8.7
 Identities = 13/44 (29%), Positives = 24/44 (54%), Gaps = 1/44 (2%)
 Frame = +3

Query: 201  KNMKIIFSLWLFLRRAASMKNFNVVKNDKKSAMSDFDGKI-RVF 329
            KN+K  ++++ F    A +K F V +  +   + DF  +I +VF
Sbjct: 948  KNLKKRYAVFNFDGSLAELKGFEVKRRGELKLIKDFQSQIFKVF 991


>SPCC576.05 |||nucear export factor|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1024

 Score = 24.2 bits (50), Expect = 8.7
 Identities = 12/28 (42%), Positives = 13/28 (46%)
 Frame = -3

Query: 174 NHSETISPPYLNCIIHNPSFKKQILQKP 91
           N +ET  PP  N I  N    K I  KP
Sbjct: 552 NGTETFIPPVQNSITSNKEAVKPIKNKP 579


>SPAC3F10.06c |||initiator methionine tRNA 2'-O-ribosyl phosphate
           transferase |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 453

 Score = 24.2 bits (50), Expect = 8.7
 Identities = 10/36 (27%), Positives = 21/36 (58%)
 Frame = +1

Query: 241 DEQLV*RILMLSKTTKNPPCLISTVKSGFFEPPLFI 348
           +EQL  +I +L  +T+N P + ++  +     P+F+
Sbjct: 263 EEQLEQKISLLLSSTRNSPTMSNSSLTHLLPTPIFV 298


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,816,098
Number of Sequences: 5004
Number of extensions: 35684
Number of successful extensions: 81
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 78
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 81
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 154448264
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)