Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0859
         (428 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_45586| Best HMM Match : EGF_2 (HMM E-Value=0.00035)                 28   2.9  
SB_2367| Best HMM Match : HEAT (HMM E-Value=1.1e-07)                   27   5.0  
SB_46123| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.7  
SB_2929| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   8.7  

>SB_45586| Best HMM Match : EGF_2 (HMM E-Value=0.00035)
          Length = 330

 Score = 28.3 bits (60), Expect = 2.9
 Identities = 14/57 (24%), Positives = 27/57 (47%)
 Frame = -3

Query: 228 IRKR*SSYFLFFKYTLILNHSETISPPYLNCIIHNPSFKKQILQKPG*FLLVFLNSY 58
           ++KR    F  +  T+ + HS     P ++C++ N   +K ++   G F  V  N +
Sbjct: 87  LKKRNIPVFDVYPMTVRIAHSHRNFKPQVSCVLSNGETQKPVVNDGGEFSFVNFNEH 143


>SB_2367| Best HMM Match : HEAT (HMM E-Value=1.1e-07)
          Length = 653

 Score = 27.5 bits (58), Expect = 5.0
 Identities = 14/58 (24%), Positives = 30/58 (51%)
 Frame = +3

Query: 237 LRRAASMKNFNVVKNDKKSAMSDFDGKIRVF*TTLVYNDNYTYLVFEK*PIFVSGFFP 410
           +R  A +   +++ +    AMS  D  +++F   L ++D+Y YL   +  + ++G  P
Sbjct: 485 VRGHAMLSLASLINHRDPKAMSKVDTLLKIFEEQLAHDDSYIYLAAVQGLVALAGLRP 542


>SB_46123| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 771

 Score = 26.6 bits (56), Expect = 8.7
 Identities = 9/26 (34%), Positives = 16/26 (61%)
 Frame = -3

Query: 192 KYTLILNHSETISPPYLNCIIHNPSF 115
           +YT+ +N S+ + P +     H+PSF
Sbjct: 733 RYTVFINMSQILEPDFAQPKFHSPSF 758


>SB_2929| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 385

 Score = 26.6 bits (56), Expect = 8.7
 Identities = 19/66 (28%), Positives = 29/66 (43%), Gaps = 2/66 (3%)
 Frame = -2

Query: 406 KNPDTNIGYFSNTKYV*LSL*TRVVQKTLILPSKSDMADFLSFLTTLK--FFILAARLKN 233
           +NP+ N+G  +      L   T  V K L    K      ++FLT +K    +L  R   
Sbjct: 28  QNPENNVGLMTTASLEVLVTLTTDVGKLLTTLHKVQPQGDVNFLTAVKKAHLVLKHRQGK 87

Query: 232 NHKEKM 215
           NHK ++
Sbjct: 88  NHKMRI 93


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,414,175
Number of Sequences: 59808
Number of extensions: 222204
Number of successful extensions: 294
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 284
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 294
length of database: 16,821,457
effective HSP length: 75
effective length of database: 12,335,857
effective search space used: 826502419
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)