Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0859
         (428 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81064-7|CAB02960.2|  382|Caenorhabditis elegans Hypothetical pr...    28   3.3  
AL031621-7|CAE46665.1|  382|Caenorhabditis elegans Hypothetical ...    28   3.3  
Z99288-5|CAB16548.2|  336|Caenorhabditis elegans Hypothetical pr...    27   7.5  
AC084158-7|AAK68560.1|  929|Caenorhabditis elegans Hypothetical ...    27   7.5  
L07144-12|AAM54162.1| 1053|Caenorhabditis elegans Hypothetical p...    26   10.0 

>Z81064-7|CAB02960.2|  382|Caenorhabditis elegans Hypothetical
           protein F16B12.8 protein.
          Length = 382

 Score = 27.9 bits (59), Expect = 3.3
 Identities = 11/40 (27%), Positives = 25/40 (62%)
 Frame = -2

Query: 340 RVVQKTLILPSKSDMADFLSFLTTLKFFILAARLKNNHKE 221
           + V   ++LP K +  +  S +T L+ F+ A +L+++H++
Sbjct: 87  KCVNLGMMLPPKKEPKNLDSSITALQTFLAALKLRDDHRQ 126


>AL031621-7|CAE46665.1|  382|Caenorhabditis elegans Hypothetical
           protein F16B12.8 protein.
          Length = 382

 Score = 27.9 bits (59), Expect = 3.3
 Identities = 11/40 (27%), Positives = 25/40 (62%)
 Frame = -2

Query: 340 RVVQKTLILPSKSDMADFLSFLTTLKFFILAARLKNNHKE 221
           + V   ++LP K +  +  S +T L+ F+ A +L+++H++
Sbjct: 87  KCVNLGMMLPPKKEPKNLDSSITALQTFLAALKLRDDHRQ 126


>Z99288-5|CAB16548.2|  336|Caenorhabditis elegans Hypothetical
           protein ZK262.6 protein.
          Length = 336

 Score = 26.6 bits (56), Expect = 7.5
 Identities = 16/49 (32%), Positives = 28/49 (57%)
 Frame = +1

Query: 268 MLSKTTKNPPCLISTVKSGFFEPPLFIMIIIHI*YLKNNLYSCLDFFQY 414
           ++ K ++N P  +ST ++G+F   LF++II       + L SC  F+ Y
Sbjct: 126 IIMKMSRNAPGFLSTTRNGYF-LTLFLIII-------STLISCSYFYGY 166


>AC084158-7|AAK68560.1|  929|Caenorhabditis elegans Hypothetical
           protein Y69A2AR.16 protein.
          Length = 929

 Score = 26.6 bits (56), Expect = 7.5
 Identities = 10/26 (38%), Positives = 15/26 (57%)
 Frame = -3

Query: 207 YFLFFKYTLILNHSETISPPYLNCII 130
           + LFFK    + H ET+    +NC+I
Sbjct: 74  FILFFKLHSKIRHDETLCTKSMNCLI 99


>L07144-12|AAM54162.1| 1053|Caenorhabditis elegans Hypothetical
           protein R05D3.1 protein.
          Length = 1053

 Score = 26.2 bits (55), Expect = 10.0
 Identities = 8/14 (57%), Positives = 12/14 (85%)
 Frame = -3

Query: 147 YLNCIIHNPSFKKQ 106
           ++NC+I NPSF+ Q
Sbjct: 267 FINCLIENPSFESQ 280


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,805,225
Number of Sequences: 27780
Number of extensions: 193380
Number of successful extensions: 379
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 375
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 379
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 713998766
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)