Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= mg--0858
(678 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC800.10c |||EPS15 repeat family actin cortical patch componen... 31 0.12
SPAC22F3.13 |tsc1||hamartin|Schizosaccharomyces pombe|chr 1|||Ma... 30 0.35
SPAPB1E7.01c |||sequence orphan|Schizosaccharomyces pombe|chr 1|... 29 0.47
SPAC1486.04c |alm1||medial ring protein Alm1|Schizosaccharomyces... 29 0.47
SPBC13A2.02 |||nucleoporin Nup82|Schizosaccharomyces pombe|chr 2... 28 1.1
SPAP8A3.12c |||tripeptidylpeptidase |Schizosaccharomyces pombe|c... 28 1.4
SPAC19B12.10 |sst2||human AMSH protein homolog|Schizosaccharomyc... 27 1.9
SPAC4D7.01c |sec71|sec7a, SPAP8A3.15c|Sec7 domain|Schizosaccharo... 27 1.9
SPAP7G5.04c |lys1||aminoadipate-semialdehyde dehydrogenase |Schi... 27 1.9
SPCC162.08c |nup211||nuclear pore complex associated protein|Sch... 27 1.9
SPAC4A8.16c |tif33|SPAC823.01c|translation initiation factor eIF... 27 2.5
SPAC1399.05c |||transcription factor, zf-fungal binuclear cluste... 27 2.5
SPAC8C9.06c |||mitochondrial translation regulator |Schizosaccha... 27 3.3
SPCC645.05c |myo2|rng5|myosin II heavy chain|Schizosaccharomyces... 27 3.3
SPBP19A11.06 |lid2|SPBP4H10.01|Lid2 complex subunit Lid2 |Schizo... 27 3.3
SPAC4H3.11c |ppc89|mug127|spindle pole body protein Ppc89|Schizo... 26 4.4
SPBC16E9.10c |||AAA family ATPase Rix7 |Schizosaccharomyces pomb... 26 4.4
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit... 26 5.8
SPAC29E6.10c ||SPAC30.14c|kinetochore protein |Schizosaccharomyc... 26 5.8
SPCC188.11 |prp45|cwf13, snw1, SPCC584.08|transcriptional regula... 26 5.8
SPBC18H10.16 |||amino acid permease, unknown 9|Schizosaccharomyc... 26 5.8
SPBC16D10.08c |||heat shock protein Hsp104 |Schizosaccharomyces ... 26 5.8
>SPBC800.10c |||EPS15 repeat family actin cortical patch component
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1116
Score = 31.5 bits (68), Expect = 0.12
Identities = 13/46 (28%), Positives = 27/46 (58%)
Frame = +2
Query: 323 KLQIQITELELSLDVANKTNIDLQKTIKKQSLQLTEIQTHYDEVQR 460
KL ++ +LE L K+N DLQK+ + + L++++ E+++
Sbjct: 500 KLAAEVPKLESQLSQVKKSNDDLQKSSRDVAANLSDVKAKVSEIRK 545
>SPAC22F3.13 |tsc1||hamartin|Schizosaccharomyces pombe|chr
1|||Manual
Length = 899
Score = 29.9 bits (64), Expect = 0.35
Identities = 13/33 (39%), Positives = 21/33 (63%)
Frame = +1
Query: 523 EVEEIRGNYEQALRVKRSVEQQYEESQTRVNEL 621
++ EI+ NY++ L R +E ++ ESQ V EL
Sbjct: 813 KISEIKENYDELLTRYRELEGKFLESQAEVEEL 845
>SPAPB1E7.01c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 163
Score = 29.5 bits (63), Expect = 0.47
Identities = 19/69 (27%), Positives = 36/69 (52%), Gaps = 1/69 (1%)
Frame = +2
Query: 248 RNQQLNARVVEAETKLKSEVTRIKKKLQIQITELELSLDVANKTNID-LQKTIKKQSLQL 424
++Q N+ V KLKS +KKK++ Q+ + + + + N D L++ + K +L
Sbjct: 61 KDQSENSWVTSKNEKLKSLPPALKKKIERQLQKKKEAEKIEGGKNHDNLKRKLNKVGDEL 120
Query: 425 TEIQTHYDE 451
E Q+ D+
Sbjct: 121 NEQQSDTDD 129
>SPAC1486.04c |alm1||medial ring protein Alm1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1727
Score = 29.5 bits (63), Expect = 0.47
Identities = 22/73 (30%), Positives = 40/73 (54%)
Frame = +2
Query: 254 QQLNARVVEAETKLKSEVTRIKKKLQIQITELELSLDVANKTNIDLQKTIKKQSLQLTEI 433
++L A ++L+SEV +++KL Q + L +V + N + Q+ + ++ L E+
Sbjct: 285 KRLTALWESKSSELQSEVAALQEKLTSQQS---LYNNVTEELNNNKQQLLISEN-SLREL 340
Query: 434 QTHYDEVQRQLQV 472
Q YD V +LQV
Sbjct: 341 QEKYDSVVSELQV 353
>SPBC13A2.02 |||nucleoporin Nup82|Schizosaccharomyces pombe|chr
2|||Manual
Length = 803
Score = 28.3 bits (60), Expect = 1.1
Identities = 20/61 (32%), Positives = 31/61 (50%)
Frame = +2
Query: 293 LKSEVTRIKKKLQIQITELELSLDVANKTNIDLQKTIKKQSLQLTEIQTHYDEVQRQLQV 472
LK+ + R K + Q T + S D+ LQK + +QSL + E++T QR LQ
Sbjct: 744 LKTLLQRTKPR-DAQTTLVASSSDMRLAAIEQLQKLLAQQSLSIKELKTKTVSFQRLLQT 802
Query: 473 T 475
+
Sbjct: 803 S 803
>SPAP8A3.12c |||tripeptidylpeptidase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1274
Score = 27.9 bits (59), Expect = 1.4
Identities = 20/78 (25%), Positives = 39/78 (50%)
Frame = +2
Query: 278 EAETKLKSEVTRIKKKLQIQITELELSLDVANKTNIDLQKTIKKQSLQLTEIQTHYDEVQ 457
E E LK + K L++Q+ +L D+ +TN L SL TE + Y Q
Sbjct: 1080 EKEKHLKYLQSSYKNSLEVQLAKL----DIVKETNERLSTADSILSLIDTEALSRYYSCQ 1135
Query: 458 RQLQVTLDQYGVAQRRIS 511
++++ T+ + V +++++
Sbjct: 1136 QKVEDTIPRDVVLEKKMA 1153
>SPAC19B12.10 |sst2||human AMSH protein homolog|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 435
Score = 27.5 bits (58), Expect = 1.9
Identities = 15/61 (24%), Positives = 33/61 (54%), Gaps = 1/61 (1%)
Frame = +1
Query: 499 AQDKSLTGEVEEIRGNYEQALRVKRSVEQQYEESQTRVNELTVI-NVNLSSSKAKIEQEL 675
A K L + +R E+ +K V++QYE+ Q + N+L + +++ S+ +E+ +
Sbjct: 79 AYKKELFDYYQGVRNALEEIELIKPIVKEQYEQYQCQKNDLDDLKKLSMKDSQPSLEKPV 138
Query: 676 A 678
+
Sbjct: 139 S 139
>SPAC4D7.01c |sec71|sec7a, SPAP8A3.15c|Sec7 domain|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1811
Score = 27.5 bits (58), Expect = 1.9
Identities = 17/77 (22%), Positives = 35/77 (45%), Gaps = 2/77 (2%)
Frame = +2
Query: 314 IKKKLQIQITELELSLDVANKTNIDLQKTIKKQSLQLTEIQTHYDEVQRQLQVTLDQYGV 493
+K +++ E+E SL+++N LQK ++ + I+ + + L Q
Sbjct: 1169 VKALIEVSWEEIECSLELSNPRLFSLQKLVEISYYNMRRIRMEWSSIWSLLGTYFTQVSC 1228
Query: 494 AQRRI--SHSPERLRRF 538
+ I S + + LR+F
Sbjct: 1229 HENSIIASFALDSLRQF 1245
>SPAP7G5.04c |lys1||aminoadipate-semialdehyde dehydrogenase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1419
Score = 27.5 bits (58), Expect = 1.9
Identities = 13/53 (24%), Positives = 31/53 (58%)
Frame = +2
Query: 398 TIKKQSLQLTEIQTHYDEVQRQLQVTLDQYGVAQRRISHSPERLRRFVATTSR 556
++KK S QLT +++ + QL++ +Q ++ R++ ++L + V + S+
Sbjct: 193 SVKKPSDQLTSLRSQFTFPDLQLKLIYNQLLFSESRVNIVADQLLKLVVSASK 245
>SPCC162.08c |nup211||nuclear pore complex associated
protein|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1837
Score = 27.5 bits (58), Expect = 1.9
Identities = 14/50 (28%), Positives = 24/50 (48%)
Frame = +2
Query: 317 KKKLQIQITELELSLDVANKTNIDLQKTIKKQSLQLTEIQTHYDEVQRQL 466
K +Q+Q+T L +A + DL+K++ E+ Y +Q QL
Sbjct: 704 KSNIQLQLTSLTSERSLALEKLNDLEKSLVLSERSKDELDESYKSLQEQL 753
>SPAC4A8.16c |tif33|SPAC823.01c|translation initiation factor
eIF3c|Schizosaccharomyces pombe|chr 1|||Manual
Length = 918
Score = 27.1 bits (57), Expect = 2.5
Identities = 17/52 (32%), Positives = 26/52 (50%), Gaps = 1/52 (1%)
Frame = +1
Query: 445 R*GPEAVAGDSRPVRSRPAQDKSLTGEVEEIRGNYEQALRVKRSV-EQQYEE 597
R GP + ++PA K L GE E + E+ RV +S +++YEE
Sbjct: 131 RSGPSSFLKKPEKEEAKPAGLKFLRGESSEESSDEEEGRRVVKSAKDKRYEE 182
>SPAC1399.05c |||transcription factor, zf-fungal binuclear cluster
type|Schizosaccharomyces pombe|chr 1|||Manual
Length = 529
Score = 27.1 bits (57), Expect = 2.5
Identities = 16/80 (20%), Positives = 37/80 (46%)
Frame = +2
Query: 314 IKKKLQIQITELELSLDVANKTNIDLQKTIKKQSLQLTEIQTHYDEVQRQLQVTLDQYGV 493
I KL+ ++ LE ++ + I Q ++K + + DE++ L++ +++YG
Sbjct: 82 INSKLENRLKVLEKAISSITNSPIAGQISLKSEKDVFLQGLLSMDEIELLLEIFIERYGK 141
Query: 494 AQRRISHSPERLRRFVATTS 553
+ +S + + T S
Sbjct: 142 RWLSVDYSASQYMELLYTKS 161
>SPAC8C9.06c |||mitochondrial translation regulator
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 931
Score = 26.6 bits (56), Expect = 3.3
Identities = 14/48 (29%), Positives = 30/48 (62%)
Frame = +2
Query: 287 TKLKSEVTRIKKKLQIQITELELSLDVANKTNIDLQKTIKKQSLQLTE 430
+++ SE++RIK L + +SLDV+ ++L + +KK+ +++ E
Sbjct: 418 SRVNSELSRIKHLLNCFLNSSTVSLDVS--MVLELLRDLKKKKIKVDE 463
>SPCC645.05c |myo2|rng5|myosin II heavy chain|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1526
Score = 26.6 bits (56), Expect = 3.3
Identities = 15/68 (22%), Positives = 36/68 (52%), Gaps = 1/68 (1%)
Frame = +2
Query: 251 NQQLNARVVEAETKLKSEVTRIKKKLQIQITEL-ELSLDVANKTNIDLQKTIKKQSLQLT 427
NQ++N + ++ E L + R+KK + T + ++S+ K + + K +++ ++
Sbjct: 1015 NQKMNEKSIQQEGSLSESLKRVKKLERENSTLISDVSILKQQKEELSVLKGVQELTINNL 1074
Query: 428 EIQTHYDE 451
E + +Y E
Sbjct: 1075 EEKVNYLE 1082
>SPBP19A11.06 |lid2|SPBP4H10.01|Lid2 complex subunit Lid2
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1513
Score = 26.6 bits (56), Expect = 3.3
Identities = 11/25 (44%), Positives = 15/25 (60%)
Frame = +2
Query: 230 PQADKHRNQQLNARVVEAETKLKSE 304
P++ + N + VEAETK KSE
Sbjct: 1286 PKSSNEKKSSNNVKAVEAETKSKSE 1310
>SPAC4H3.11c |ppc89|mug127|spindle pole body protein
Ppc89|Schizosaccharomyces pombe|chr 1|||Manual
Length = 783
Score = 26.2 bits (55), Expect = 4.4
Identities = 14/53 (26%), Positives = 25/53 (47%)
Frame = +2
Query: 389 LQKTIKKQSLQLTEIQTHYDEVQRQLQVTLDQYGVAQRRISHSPERLRRFVAT 547
L+K + + E DE+Q +L++ D Y +RR ER+ + + T
Sbjct: 296 LEKKFEILKRERNECNAKIDELQDKLELLTDAYNREKRRARSLEERMSKEMLT 348
>SPBC16E9.10c |||AAA family ATPase Rix7 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 779
Score = 26.2 bits (55), Expect = 4.4
Identities = 13/46 (28%), Positives = 25/46 (54%)
Frame = +1
Query: 511 SLTGEVEEIRGNYEQALRVKRSVEQQYEESQTRVNELTVINVNLSS 648
+L EVEE + + + V +E+Q + + V + VIN +++S
Sbjct: 71 TLKAEVEEKLASSQDLVLVDSDMEEQSDSNLMEVKDTNVINKSITS 116
>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
hand and WH2 motif |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1794
Score = 25.8 bits (54), Expect = 5.8
Identities = 11/45 (24%), Positives = 29/45 (64%)
Frame = +2
Query: 218 NRSHPQADKHRNQQLNARVVEAETKLKSEVTRIKKKLQIQITELE 352
+++ P+A + RN+ +++++ E E K K+E ++++ +T +E
Sbjct: 1102 DQTSPEATQERNRTISSKLAEME-KQKNESKAALEQMKNYVTNIE 1145
>SPAC29E6.10c ||SPAC30.14c|kinetochore protein |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1085
Score = 25.8 bits (54), Expect = 5.8
Identities = 18/69 (26%), Positives = 34/69 (49%)
Frame = +2
Query: 206 EGRRNRSHPQADKHRNQQLNARVVEAETKLKSEVTRIKKKLQIQITELELSLDVANKTNI 385
E +R + A++ + L A+ E E + K E R+K++ + + ELE +
Sbjct: 611 ERQRREAERLAEQAAQKALEAKRQE-EARKKREEQRLKREQEKKQQELERQKREEKQKQK 669
Query: 386 DLQKTIKKQ 412
+ +K +KKQ
Sbjct: 670 EREKKLKKQ 678
>SPCC188.11 |prp45|cwf13, snw1, SPCC584.08|transcriptional regulator
Prp45|Schizosaccharomyces pombe|chr 3|||Manual
Length = 557
Score = 25.8 bits (54), Expect = 5.8
Identities = 12/24 (50%), Positives = 15/24 (62%)
Frame = +2
Query: 350 ELSLDVANKTNIDLQKTIKKQSLQ 421
E +VANKT + LQK + KQ Q
Sbjct: 144 EQKQEVANKTKLALQKILSKQIAQ 167
>SPBC18H10.16 |||amino acid permease, unknown 9|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1050
Score = 25.8 bits (54), Expect = 5.8
Identities = 10/24 (41%), Positives = 14/24 (58%)
Frame = -1
Query: 396 FWRSMLVLLATSRESSSSVIWICN 325
FWR ++LL + S +VI CN
Sbjct: 553 FWRPQILLLINNPNRSENVIRFCN 576
>SPBC16D10.08c |||heat shock protein Hsp104 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 905
Score = 25.8 bits (54), Expect = 5.8
Identities = 15/55 (27%), Positives = 26/55 (47%)
Frame = +1
Query: 502 QDKSLTGEVEEIRGNYEQALRVKRSVEQQYEESQTRVNELTVINVNLSSSKAKIE 666
+D++ ++ R EQ R + ++YE ++R +EL L KAK E
Sbjct: 437 KDEASKERLKAARKEAEQVEEETRPIREKYELEKSRGSELQDAKRRLDELKAKAE 491
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,050,669
Number of Sequences: 5004
Number of extensions: 33243
Number of successful extensions: 183
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 173
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 182
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 311890690
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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