Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0858
         (678 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       32   0.004
DQ091184-1|AAZ42364.1|  157|Apis mellifera lipophorin receptor p...    21   8.2  
DQ091183-1|AAZ42363.1|  128|Apis mellifera lipophorin receptor p...    21   8.2  
AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    21   8.2  
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    21   8.2  
AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.          21   8.2  

>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 32.3 bits (70), Expect = 0.004
 Identities = 20/67 (29%), Positives = 35/67 (52%)
 Frame = +2

Query: 299 SEVTRIKKKLQIQITELELSLDVANKTNIDLQKTIKKQSLQLTEIQTHYDEVQRQLQVTL 478
           +E+ R K +  IQ  + +L L+V  +T++      KK S  L ++      + +QLQ+T 
Sbjct: 135 AELGRKKLEQAIQQLQEQLQLNVIQQTHLLQTADKKKASAPLQQLALQQQRLIQQLQITQ 194

Query: 479 DQYGVAQ 499
            QY + Q
Sbjct: 195 SQYLLQQ 201


>DQ091184-1|AAZ42364.1|  157|Apis mellifera lipophorin receptor
           protein.
          Length = 157

 Score = 21.4 bits (43), Expect = 8.2
 Identities = 9/23 (39%), Positives = 13/23 (56%)
 Frame = -2

Query: 554 CS*LPRISSTSPVSDLSCAGRLR 486
           C   PRI+S SP+   +C   L+
Sbjct: 47  CLPAPRINSKSPLLSCACPDGLK 69


>DQ091183-1|AAZ42363.1|  128|Apis mellifera lipophorin receptor
           protein.
          Length = 128

 Score = 21.4 bits (43), Expect = 8.2
 Identities = 9/23 (39%), Positives = 13/23 (56%)
 Frame = -2

Query: 554 CS*LPRISSTSPVSDLSCAGRLR 486
           C   PRI+S SP+   +C   L+
Sbjct: 47  CLPAPRINSKSPLLSCACPDGLK 69


>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 21.4 bits (43), Expect = 8.2
 Identities = 10/27 (37%), Positives = 13/27 (48%)
 Frame = -1

Query: 387 SMLVLLATSRESSSSVIWICNFFLMRV 307
           + LV  +   E   S IW C FF M +
Sbjct: 359 AFLVYPSAVLELPGSSIWSCLFFFMLI 385


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 21.4 bits (43), Expect = 8.2
 Identities = 10/27 (37%), Positives = 13/27 (48%)
 Frame = -1

Query: 387 SMLVLLATSRESSSSVIWICNFFLMRV 307
           + LV  +   E   S IW C FF M +
Sbjct: 412 AFLVYPSAVLELPGSSIWSCLFFFMLI 438


>AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.
          Length = 652

 Score = 21.4 bits (43), Expect = 8.2
 Identities = 13/46 (28%), Positives = 22/46 (47%)
 Frame = -1

Query: 210 PSLADDAQPHDGTGRTQPSISVSAVPAPCGQLRPPCRRQ*VPLARS 73
           P+  D A     +G+T    + +    P G L   C+R+ + L+RS
Sbjct: 522 PADLDRALEAIRSGQTSVQRASTEFGIPTGTLYGRCKREGIELSRS 567


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 144,533
Number of Sequences: 438
Number of extensions: 2343
Number of successful extensions: 9
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20586735
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)