Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0857
         (730 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC31A2.05c |mis4||cohesin loading factor Mis4|Schizosaccharomy...    28   1.2  
SPBC23G7.16 |ctr6||vacuolar copper transporter Ctr6 |Schizosacch...    27   3.6  
SPAC19G12.16c |adg2|SPAC23A1.01c, mug46|conserved fungal protein...    27   3.6  
SPAC343.10 |met11|mthfr2|methylenetetrahydrofolate reductase Met...    26   4.8  
SPBC1734.09 |||NST UDP-N-acetylglucosamine transporter|Schizosac...    25   8.4  

>SPAC31A2.05c |mis4||cohesin loading factor Mis4|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1583

 Score = 28.3 bits (60), Expect = 1.2
 Identities = 12/37 (32%), Positives = 22/37 (59%)
 Frame = +3

Query: 312  WKKNTVVDMTEHCQ*LPCISDSCSSRHVRFRI*DIKL 422
            W +     + +H   LPCI DSC S+++R+ +  I++
Sbjct: 1291 WIEGVSASLMQHF--LPCILDSCFSKNLRYSMLGIEI 1325


>SPBC23G7.16 |ctr6||vacuolar copper transporter Ctr6
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 148

 Score = 26.6 bits (56), Expect = 3.6
 Identities = 13/40 (32%), Positives = 21/40 (52%), Gaps = 1/40 (2%)
 Frame = +1

Query: 166 LSGGHIIQTC-LHFIQSTASYMLMLIFMTYKCGCVWPLSL 282
           L  G   + C L+ +Q   SY LML+ MTY    +  +++
Sbjct: 88  LKSGRPFRLCALYAVQLVFSYFLMLVAMTYNAYVILAIAI 127


>SPAC19G12.16c |adg2|SPAC23A1.01c, mug46|conserved fungal
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 670

 Score = 26.6 bits (56), Expect = 3.6
 Identities = 16/46 (34%), Positives = 25/46 (54%)
 Frame = -3

Query: 158 YLTTAVPAHGLLVAHSLLVILTLESLADEARVCSASL*YFKPSYST 21
           +L ++V +   L + S+L    + S +    V S+SL  F PSYST
Sbjct: 228 FLPSSVISSASLSSSSVLPTSIITSTSTPVTVSSSSLSSFTPSYST 273


>SPAC343.10 |met11|mthfr2|methylenetetrahydrofolate reductase
           Met11|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 641

 Score = 26.2 bits (55), Expect = 4.8
 Identities = 12/31 (38%), Positives = 18/31 (58%)
 Frame = +1

Query: 106 KSECATNSPCAGTAVVKYSMLSGGHIIQTCL 198
           KSE  TN+P  G + V + +  G  IIQ+ +
Sbjct: 546 KSEFLTNAPKDGASAVTWGVYPGREIIQSTI 576


>SPBC1734.09 |||NST UDP-N-acetylglucosamine
           transporter|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 316

 Score = 25.4 bits (53), Expect = 8.4
 Identities = 9/29 (31%), Positives = 18/29 (62%)
 Frame = -3

Query: 167 SIEYLTTAVPAHGLLVAHSLLVILTLESL 81
           ++E L    P+ G+L+  S  +++T+E L
Sbjct: 19  ALEALVREFPSSGILITFSQFILITIEGL 47


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,638,897
Number of Sequences: 5004
Number of extensions: 47880
Number of successful extensions: 100
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 99
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 100
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 343230174
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)