Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0857
         (730 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_06_0099 + 20070925-20073867                                         32   0.54 
07_03_1632 + 28271559-28271645,28272641-28272713,28273030-282733...    28   6.6  

>11_06_0099 + 20070925-20073867
          Length = 980

 Score = 31.9 bits (69), Expect = 0.54
 Identities = 15/33 (45%), Positives = 21/33 (63%)
 Frame = -1

Query: 415 ISQIRNLTCLLLQESLIHGNY*QCSVMSTTVFF 317
           I +++NL  L L  +L+HG + QCS MS   FF
Sbjct: 599 ICELQNLHGLDLSNNLLHGEFPQCSGMSMMSFF 631


>07_03_1632 +
           28271559-28271645,28272641-28272713,28273030-28273361,
           28273455-28274791,28275451-28275848,28275963-28277644,
           28277727-28277884,28278645-28278802,28279110-28279270,
           28279826-28280014
          Length = 1524

 Score = 28.3 bits (60), Expect = 6.6
 Identities = 18/58 (31%), Positives = 29/58 (50%), Gaps = 4/58 (6%)
 Frame = +2

Query: 8   SSSPGCCTKV*NTTEKRCTHGP---HLPAIPGSIS-PRANAQPIVRVPVLPLSNTLCC 169
           S  PG   +  +++ K   H P       +P S+S P ANA P++  PV+   + +CC
Sbjct: 523 SDMPGTSKREISSSLKNDRHTPAEEQRMHVPPSVSAPTANAAPMLPAPVVIEEHWVCC 580


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,399,856
Number of Sequences: 37544
Number of extensions: 336283
Number of successful extensions: 717
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 706
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 717
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1909952136
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)