Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0857
         (730 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_12802| Best HMM Match : Aldedh (HMM E-Value=0)                      30   1.7  
SB_6623| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   8.9  

>SB_12802| Best HMM Match : Aldedh (HMM E-Value=0)
          Length = 880

 Score = 30.3 bits (65), Expect = 1.7
 Identities = 13/23 (56%), Positives = 16/23 (69%)
 Frame = +1

Query: 1   VAIFLAGVLYEGLKYYREALHTR 69
           +A+F+  VLYEGLK  RE L  R
Sbjct: 132 IAVFILAVLYEGLKVSREMLKRR 154


>SB_6623| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 98

 Score = 27.9 bits (59), Expect = 8.9
 Identities = 15/42 (35%), Positives = 23/42 (54%)
 Frame = -3

Query: 383 ATRITNTR*LLTVFCHVDHRVLLPSEEKVADRQTKDKGQTQP 258
           AT +  T+ L+ VF +V +    PS+EKV +  T+     QP
Sbjct: 37  ATALFLTKLLMAVFINVHNLGKFPSKEKVPEASTQRNCYAQP 78


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,195,260
Number of Sequences: 59808
Number of extensions: 373890
Number of successful extensions: 783
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 737
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 782
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1949964354
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)