Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0857
         (730 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    25   0.97 
AY273778-1|AAP33487.1|  427|Apis mellifera ultraspiracle protein...    22   6.8  
AF263459-1|AAF73057.1|  427|Apis mellifera ultraspiracle protein...    22   6.8  
DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related pro...    21   9.0  

>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 24.6 bits (51), Expect = 0.97
 Identities = 9/29 (31%), Positives = 15/29 (51%)
 Frame = +2

Query: 80  PAIPGSISPRANAQPIVRVPVLPLSNTLC 166
           P    ++    N+Q I R+P+LP+    C
Sbjct: 767 PPSAQNVPQNTNSQAIPRIPILPMIPVYC 795


>AY273778-1|AAP33487.1|  427|Apis mellifera ultraspiracle protein
           protein.
          Length = 427

 Score = 21.8 bits (44), Expect = 6.8
 Identities = 11/32 (34%), Positives = 17/32 (53%)
 Frame = +3

Query: 78  CQRFQGQYHQERMRNQ*SVCRYCRCQILYAVG 173
           C+  +     +R RN+   C+YCR Q   A+G
Sbjct: 146 CREEKSCIIDKRQRNR---CQYCRYQKCLAMG 174


>AF263459-1|AAF73057.1|  427|Apis mellifera ultraspiracle protein
           protein.
          Length = 427

 Score = 21.8 bits (44), Expect = 6.8
 Identities = 11/32 (34%), Positives = 17/32 (53%)
 Frame = +3

Query: 78  CQRFQGQYHQERMRNQ*SVCRYCRCQILYAVG 173
           C+  +     +R RN+   C+YCR Q   A+G
Sbjct: 146 CREEKSCIIDKRQRNR---CQYCRYQKCLAMG 174


>DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related
           protein STG-1 protein.
          Length = 397

 Score = 21.4 bits (43), Expect = 9.0
 Identities = 6/13 (46%), Positives = 10/13 (76%)
 Frame = +3

Query: 63  HTGLICQRFQGQY 101
           H+G +C+R Q +Y
Sbjct: 292 HSGFLCERHQKRY 304


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 181,299
Number of Sequences: 438
Number of extensions: 3609
Number of successful extensions: 8
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22657590
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)