Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0857
         (730 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g28917.1 68416.m03610 zinc finger homeobox family protein / Z...    29   2.4  
At5g59040.1 68418.m07397 copper transporter family protein simil...    29   3.2  

>At3g28917.1 68416.m03610 zinc finger homeobox family protein /
           ZF-HD homeobox family protein contains Pfam profile
           PF04770:ZF-HD protein dimerisation region
          Length = 100

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 17/72 (23%), Positives = 27/72 (37%)
 Frame = +1

Query: 49  REALHTRASSASDSRVNITKSECATNSPCAGTAVVKYSMLSGGHIIQTCLHFIQSTASYM 228
           R+ +  RAS    SR + T S     +   G     ++   GG+ +  C  F+ S     
Sbjct: 4   RQVVLRRASPEEPSRSSSTASSLTVRTVRYGECQKNHAAAVGGYAVDGCREFMASRGEEG 63

Query: 229 LMLIFMTYKCGC 264
            +       CGC
Sbjct: 64  TVAALTCAACGC 75


>At5g59040.1 68418.m07397 copper transporter family protein similar
           to SP|Q39065 Copper transporter 1 (COPT1) {Arabidopsis
           thaliana}; contains Pfam profile PF04145: Ctr copper
           transporter family
          Length = 151

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 10/30 (33%), Positives = 21/30 (70%)
 Frame = +1

Query: 172 GGHIIQTCLHFIQSTASYMLMLIFMTYKCG 261
           GG ++QT ++ +++  SY++ML  M++  G
Sbjct: 86  GGGLLQTAVYTVRAALSYLVMLAVMSFNGG 115


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,775,286
Number of Sequences: 28952
Number of extensions: 253463
Number of successful extensions: 539
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 523
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 539
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1594686376
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)