Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0856
         (740 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY043292-1|AAK96031.1|  323|Tribolium castaneum homeodomain tran...    23   2.0  
AF228509-1|AAF69136.1|  325|Tribolium castaneum prothoraxless pr...    23   2.0  
AJ606487-1|CAE55183.1|  203|Tribolium castaneum Giant protein pr...    23   2.6  
AJ307577-1|CAC84070.1|  301|Tribolium castaneum dachshund protein.     22   6.0  
AY884064-1|AAX84205.1|  683|Tribolium castaneum pro-phenol oxida...    21   7.9  

>AY043292-1|AAK96031.1|  323|Tribolium castaneum homeodomain
           transcription factor Prothoraxlessprotein.
          Length = 323

 Score = 23.4 bits (48), Expect = 2.0
 Identities = 21/79 (26%), Positives = 34/79 (43%), Gaps = 4/79 (5%)
 Frame = +2

Query: 50  HHPRHQGRQGCRPAVRIGRRMHHPGSGRPRPAL-RPVQEGRLPLRQVALRAEDWPQHPLV 226
           HH  H  +Q      + G  MH  G    +P + +   +G+ P    A  A   P +P +
Sbjct: 178 HHQPHHQQQHMMYGGQQGANMHQQGPPHQQPPIQQQPNQGQQPPGNTA-AALPSPLYPWM 236

Query: 227 PS-YPGK--RQCFARYASI 274
            S +  K  RQ + RY ++
Sbjct: 237 RSQFERKRGRQTYTRYQTL 255


>AF228509-1|AAF69136.1|  325|Tribolium castaneum prothoraxless
           protein.
          Length = 325

 Score = 23.4 bits (48), Expect = 2.0
 Identities = 21/79 (26%), Positives = 34/79 (43%), Gaps = 4/79 (5%)
 Frame = +2

Query: 50  HHPRHQGRQGCRPAVRIGRRMHHPGSGRPRPAL-RPVQEGRLPLRQVALRAEDWPQHPLV 226
           HH  H  +Q      + G  MH  G    +P + +   +G+ P    A  A   P +P +
Sbjct: 180 HHQPHHQQQHMMYGGQQGANMHQQGPPHQQPPIQQQPNQGQQPPGNTA-AALPSPLYPWM 238

Query: 227 PS-YPGK--RQCFARYASI 274
            S +  K  RQ + RY ++
Sbjct: 239 RSQFERKRGRQTYTRYQTL 257


>AJ606487-1|CAE55183.1|  203|Tribolium castaneum Giant protein
           protein.
          Length = 203

 Score = 23.0 bits (47), Expect = 2.6
 Identities = 7/16 (43%), Positives = 12/16 (75%)
 Frame = +3

Query: 129 DDLAQRCAQYKKDGCH 176
           D++A RCA  +++ CH
Sbjct: 161 DEIAIRCAFLERENCH 176


>AJ307577-1|CAC84070.1|  301|Tribolium castaneum dachshund protein.
          Length = 301

 Score = 21.8 bits (44), Expect = 6.0
 Identities = 10/27 (37%), Positives = 13/27 (48%)
 Frame = +3

Query: 597 RYQRCGPQEALGSDVQLRARPPGFGAP 677
           R +RC P   L  D + R   P  G+P
Sbjct: 181 REERCDPDRPLPLDQKARDLSPRNGSP 207


>AY884064-1|AAX84205.1|  683|Tribolium castaneum pro-phenol oxidase
           subunit 2 protein.
          Length = 683

 Score = 21.4 bits (43), Expect = 7.9
 Identities = 6/8 (75%), Positives = 7/8 (87%)
 Frame = +2

Query: 206 WPQHPLVP 229
           WPQH L+P
Sbjct: 582 WPQHMLIP 589


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 172,439
Number of Sequences: 336
Number of extensions: 4084
Number of successful extensions: 15
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 19884055
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)