Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0856
         (740 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC13G6.11c |erg12||mevalonate kinase Erg12 |Schizosaccharomyce...    28   1.6  
SPAC16E8.04c |||chorismate mutase |Schizosaccharomyces pombe|chr...    28   1.6  
SPCC594.06c |||SNARE Vam7 |Schizosaccharomyces pombe|chr 3|||Manual    27   2.8  
SPAC2F7.08c |snf5||chromatin remodeling complex subunit Snf5 |Sc...    27   2.8  
SPCC330.01c |rhp16|SPCC613.13c, rad16|Rad16 homolog Rhp16|Schizo...    27   3.7  
SPBP4H10.15 |||aconitate hydratase|Schizosaccharomyces pombe|chr...    25   8.6  
SPBC1348.10c |||phospholipase |Schizosaccharomyces pombe|chr 2||...    25   8.6  
SPAC977.09c |||phospholipase |Schizosaccharomyces pombe|chr 1|||...    25   8.6  
SPAC15A10.16 |bud6|aip3, fat1, SPAC15E1.01|actin interacting pro...    25   8.6  

>SPAC13G6.11c |erg12||mevalonate kinase Erg12 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 404

 Score = 27.9 bits (59), Expect = 1.6
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = -3

Query: 540 GDCCGHGAEEGVTVARATSLGVYVF 466
           G+CC HG   G+  A AT+ G+  F
Sbjct: 183 GECCIHGTPSGIDNAVATNGGLIAF 207


>SPAC16E8.04c |||chorismate mutase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 251

 Score = 27.9 bits (59), Expect = 1.6
 Identities = 13/37 (35%), Positives = 19/37 (51%)
 Frame = +3

Query: 225 YQAIQENANVSPATPPSVRANASCQLSSPKSYLMAST 335
           Y+A+    + +  T PS R NA C  S  K Y++  T
Sbjct: 202 YKALNYGRDAADPTKPSDRINADCVASIYKDYVIPMT 238


>SPCC594.06c |||SNARE Vam7 |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 341

 Score = 27.1 bits (57), Expect = 2.8
 Identities = 18/46 (39%), Positives = 25/46 (54%), Gaps = 1/46 (2%)
 Frame = +3

Query: 201 KIGRNTPSYQAIQENANVSPATPPSVRANA-SCQLSSPKSYLMAST 335
           ++G    S++ + +NAN SP  PPS  +   S   SSP   L AST
Sbjct: 198 QLGSEFLSFKRLVKNAN-SPVAPPSASSQLNSSNPSSPFRPLSAST 242


>SPAC2F7.08c |snf5||chromatin remodeling complex subunit Snf5
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 632

 Score = 27.1 bits (57), Expect = 2.8
 Identities = 11/28 (39%), Positives = 14/28 (50%)
 Frame = +1

Query: 550 FLSGGQSEEEASVHLNAINAVDLKRPWV 633
           FL+   S E A VH+  +N  D    WV
Sbjct: 525 FLTNSNSSESALVHMQKLNLPDFTPSWV 552


>SPCC330.01c |rhp16|SPCC613.13c, rad16|Rad16 homolog
           Rhp16|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 963

 Score = 26.6 bits (56), Expect = 3.7
 Identities = 13/22 (59%), Positives = 15/22 (68%)
 Frame = -1

Query: 254 NIGVFLDSLVRGGVAANLQHAT 189
           NI +FL SL  GGVA NL  A+
Sbjct: 861 NITIFLVSLKAGGVALNLTEAS 882


>SPBP4H10.15 |||aconitate hydratase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 905

 Score = 25.4 bits (53), Expect = 8.6
 Identities = 10/36 (27%), Positives = 23/36 (63%)
 Frame = +3

Query: 36  LEKKGIIPGIKVDKGVVPLFGSEDECTTQGLDDLAQ 143
           L+K+G++P   V++       +ED+ +T+G++ L +
Sbjct: 703 LKKQGVLPLTFVNEADYEKIDAEDKVSTRGIEQLLE 738


>SPBC1348.10c |||phospholipase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 673

 Score = 25.4 bits (53), Expect = 8.6
 Identities = 17/55 (30%), Positives = 21/55 (38%)
 Frame = -3

Query: 411 YTWWSFSALYTAARTTSVTFWARSRSCSPSGKTSGSTIGTMRWL*QMEA*RAKHW 247
           Y W    A  TA+        A + S +PSG TSG+   T            KHW
Sbjct: 608 YCWDGTLATSTASVYDPTVMSAATTSRAPSGTTSGTASSTTSSSVASATPTHKHW 662


>SPAC977.09c |||phospholipase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 673

 Score = 25.4 bits (53), Expect = 8.6
 Identities = 17/55 (30%), Positives = 21/55 (38%)
 Frame = -3

Query: 411 YTWWSFSALYTAARTTSVTFWARSRSCSPSGKTSGSTIGTMRWL*QMEA*RAKHW 247
           Y W    A  TA+        A + S +PSG TSG+   T            KHW
Sbjct: 608 YCWDGTLATSTASVYDPTVMSAATTSRAPSGTTSGTASSTTSSSVASATPTHKHW 662


>SPAC15A10.16 |bud6|aip3, fat1, SPAC15E1.01|actin interacting
           protein 3 homolog Bud6|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1385

 Score = 25.4 bits (53), Expect = 8.6
 Identities = 14/49 (28%), Positives = 23/49 (46%), Gaps = 1/49 (2%)
 Frame = +2

Query: 380 VYKALNDHHVYLEGTLLKPNMVTA-GQSCKKTYTPNDVARATVTPSSAP 523
           V ++++DH +    T+    +     Q  +   +PN    ATV PSS P
Sbjct: 392 VTRSVSDHRILSSSTINDGEVAPPLPQRSRTISSPNSPLSATVLPSSTP 440


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,965,452
Number of Sequences: 5004
Number of extensions: 62215
Number of successful extensions: 213
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 204
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 213
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 351258950
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)