Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= mg--0856
(740 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_26182| Best HMM Match : Glycolytic (HMM E-Value=0) 137 8e-33
SB_28080| Best HMM Match : Glycolytic (HMM E-Value=0) 127 1e-29
SB_39902| Best HMM Match : Glycolytic (HMM E-Value=1.2) 64 2e-10
SB_32406| Best HMM Match : VWA (HMM E-Value=8.8e-32) 33 0.24
SB_25799| Best HMM Match : DUF618 (HMM E-Value=2e-26) 33 0.32
SB_26407| Best HMM Match : UQ_con (HMM E-Value=0) 33 0.32
SB_17144| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.3
SB_31213| Best HMM Match : SNF2_N (HMM E-Value=0) 30 2.3
SB_58036| Best HMM Match : Cadherin (HMM E-Value=0) 29 4.0
SB_52129| Best HMM Match : Sec23_trunk (HMM E-Value=0) 29 5.2
SB_48451| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.2
SB_57096| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.9
SB_30172| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.9
SB_40773| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.1
SB_34438| Best HMM Match : Ribosomal_L23eN (HMM E-Value=2) 28 9.1
>SB_26182| Best HMM Match : Glycolytic (HMM E-Value=0)
Length = 949
Score = 137 bits (332), Expect = 8e-33
Identities = 64/84 (76%), Positives = 70/84 (83%)
Frame = +2
Query: 257 ARYASICQSQRIVPIVEPEVLPDGEHDLDRAQKVTEVVLAAVYKALNDHHVYLEGTLLKP 436
ARYASICQ +VPIVEPEVL DG+H L+RAQKVTE VL+A YKAL DHH+YLEGTLLKP
Sbjct: 170 ARYASICQQNGLVPIVEPEVLCDGDHTLERAQKVTEAVLSATYKALMDHHIYLEGTLLKP 229
Query: 437 NMVTAGQSCKKTYTPNDVARATVT 508
NMVTAGQSC YTP A+ATVT
Sbjct: 230 NMVTAGQSCPTKYTPEQCAQATVT 253
Score = 127 bits (306), Expect = 1e-29
Identities = 62/85 (72%), Positives = 68/85 (80%), Gaps = 1/85 (1%)
Frame = +3
Query: 3 KADDGTPLVSLLEKKGIIPGIKVDKGVVPLFGSE-DECTTQGLDDLAQRCAQYKKDGCHF 179
KADDGTP V LL +GIIPGIKVDKGVV L G++ E TTQGLD L +RCAQYKKDGC F
Sbjct: 84 KADDGTPFVRLLRDQGIIPGIKVDKGVVVLAGTDAGETTTQGLDGLGERCAQYKKDGCDF 143
Query: 180 AKWRCVLKIGRNTPSYQAIQENANV 254
AKWRCVLKI TPS A++ENANV
Sbjct: 144 AKWRCVLKITDYTPSELAMKENANV 168
Score = 111 bits (267), Expect = 6e-25
Identities = 50/73 (68%), Positives = 61/73 (83%)
Frame = +1
Query: 520 TVPAAVPGVTFLSGGQSEEEASVHLNAINAVDLKRPWVLTFSYGRALQASVLRAWGGKTE 699
TVP A+PGVTFLSGGQSEE+A++HLNAIN K+PW LTFS+GRALQAS L+AW GK+
Sbjct: 258 TVPPAMPGVTFLSGGQSEEQATIHLNAINQYQGKKPWKLTFSFGRALQASALKAWSGKSG 317
Query: 700 NILAGQQELIKRA 738
+ AGQ+E +KRA
Sbjct: 318 CVKAGQEEFLKRA 330
>SB_28080| Best HMM Match : Glycolytic (HMM E-Value=0)
Length = 304
Score = 127 bits (306), Expect = 1e-29
Identities = 62/85 (72%), Positives = 68/85 (80%), Gaps = 1/85 (1%)
Frame = +3
Query: 3 KADDGTPLVSLLEKKGIIPGIKVDKGVVPLFGSE-DECTTQGLDDLAQRCAQYKKDGCHF 179
KADDGTP V LL +GIIPGIKVDKGVV L G++ E TTQGLD L +RCAQYKKDGC F
Sbjct: 84 KADDGTPFVRLLRDQGIIPGIKVDKGVVVLAGTDAGETTTQGLDGLGERCAQYKKDGCDF 143
Query: 180 AKWRCVLKIGRNTPSYQAIQENANV 254
AKWRCVLKI TPS A++ENANV
Sbjct: 144 AKWRCVLKITDYTPSELAMKENANV 168
Score = 113 bits (273), Expect = 1e-25
Identities = 57/86 (66%), Positives = 66/86 (76%)
Frame = +2
Query: 257 ARYASICQSQRIVPIVEPEVLPDGEHDLDRAQKVTEVVLAAVYKALNDHHVYLEGTLLKP 436
ARYASICQ +VPIVEPEVL DG+H L+RAQKVTE VL+A YKAL DHH+YLEGTLLKP
Sbjct: 170 ARYASICQQNGLVPIVEPEVLCDGDHTLERAQKVTEAVLSATYKALMDHHIYLEGTLLKP 229
Query: 437 NMVTAGQSCKKTYTPNDVARATVTPS 514
NMVTA ++ ++ AR T PS
Sbjct: 230 NMVTAAHPPFASWRNSEEAR-TDRPS 254
>SB_39902| Best HMM Match : Glycolytic (HMM E-Value=1.2)
Length = 71
Score = 63.7 bits (148), Expect = 2e-10
Identities = 26/40 (65%), Positives = 34/40 (85%)
Frame = +1
Query: 619 KRPWVLTFSYGRALQASVLRAWGGKTENILAGQQELIKRA 738
K+PW LTFS+GRALQAS L+AW GK++ + AGQ+E +KRA
Sbjct: 2 KKPWKLTFSFGRALQASALKAWSGKSDCVKAGQEEFLKRA 41
>SB_32406| Best HMM Match : VWA (HMM E-Value=8.8e-32)
Length = 1074
Score = 33.1 bits (72), Expect = 0.24
Identities = 20/57 (35%), Positives = 26/57 (45%), Gaps = 3/57 (5%)
Frame = +2
Query: 14 WNPSGLPAGEEGHHPRHQGRQGCRPAVRIGRRMHHPGSGR---PRPALRPVQEGRLP 175
W P G+P G P GR G P G + G+ PRP +RP + GR+P
Sbjct: 515 WRPGGIPGRTPGRRPG--GRPGNIPPFVPGLIIPSRRPGKRPGPRPGIRPGRGGRIP 569
>SB_25799| Best HMM Match : DUF618 (HMM E-Value=2e-26)
Length = 687
Score = 32.7 bits (71), Expect = 0.32
Identities = 20/56 (35%), Positives = 23/56 (41%), Gaps = 3/56 (5%)
Frame = +2
Query: 26 GLPAGEEGHHPRHQGR---QGCRPAVRIGRRMHHPGSGRPRPALRPVQEGRLPLRQ 184
G P E G P GR + RP +GR H PG P P + GR P Q
Sbjct: 372 GRPPHEPGRPPYEPGRPPHEPGRPPHELGRPPHEPGRPPHEPGRLPHEPGRPPYEQ 427
Score = 30.7 bits (66), Expect = 1.3
Identities = 19/53 (35%), Positives = 21/53 (39%), Gaps = 3/53 (5%)
Frame = +2
Query: 26 GLPAGEEGHHPRHQGR---QGCRPAVRIGRRMHHPGSGRPRPALRPVQEGRLP 175
G P E G P GR + RP GR H PG P P + GR P
Sbjct: 337 GRPPHEPGRPPHEPGRPPHEPGRPPHEPGRPPHEPGRPPHEPGRPPYEPGRPP 389
Score = 29.5 bits (63), Expect = 3.0
Identities = 19/53 (35%), Positives = 21/53 (39%), Gaps = 3/53 (5%)
Frame = +2
Query: 26 GLPAGEEGHHPRHQGR---QGCRPAVRIGRRMHHPGSGRPRPALRPVQEGRLP 175
G P E G P GR + RP GR H PG P P + GR P
Sbjct: 323 GRPPYEPGRPPHEPGRPPHEPGRPPHEPGRPPHEPGRPPHEPGRPPHEPGRPP 375
Score = 29.5 bits (63), Expect = 3.0
Identities = 19/53 (35%), Positives = 21/53 (39%), Gaps = 3/53 (5%)
Frame = +2
Query: 26 GLPAGEEGHHPRHQGR---QGCRPAVRIGRRMHHPGSGRPRPALRPVQEGRLP 175
G P E G P GR + RP GR H PG P P + GR P
Sbjct: 344 GRPPHEPGRPPHEPGRPPHEPGRPPHEPGRPPHEPGRPPYEPGRPPHEPGRPP 396
>SB_26407| Best HMM Match : UQ_con (HMM E-Value=0)
Length = 1282
Score = 32.7 bits (71), Expect = 0.32
Identities = 20/56 (35%), Positives = 23/56 (41%), Gaps = 3/56 (5%)
Frame = +2
Query: 26 GLPAGEEGHHPRHQGR---QGCRPAVRIGRRMHHPGSGRPRPALRPVQEGRLPLRQ 184
G P E G P GR + RP +GR H PG P P + GR P Q
Sbjct: 138 GRPPHEPGRPPYEPGRPPHEPGRPPHELGRPPHEPGRPPHEPGRLPHEPGRPPYEQ 193
Score = 30.7 bits (66), Expect = 1.3
Identities = 19/53 (35%), Positives = 21/53 (39%), Gaps = 3/53 (5%)
Frame = +2
Query: 26 GLPAGEEGHHPRHQGR---QGCRPAVRIGRRMHHPGSGRPRPALRPVQEGRLP 175
G P E G P GR + RP GR H PG P P + GR P
Sbjct: 103 GRPPHEPGRPPHEPGRPPHEPGRPPHEPGRPPHEPGRPPHEPGRPPYEPGRPP 155
Score = 29.5 bits (63), Expect = 3.0
Identities = 19/53 (35%), Positives = 21/53 (39%), Gaps = 3/53 (5%)
Frame = +2
Query: 26 GLPAGEEGHHPRHQGR---QGCRPAVRIGRRMHHPGSGRPRPALRPVQEGRLP 175
G P E G P GR + RP GR H PG P P + GR P
Sbjct: 89 GRPPYEPGRPPHEPGRPPHEPGRPPHEPGRPPHEPGRPPHEPGRPPHEPGRPP 141
Score = 29.5 bits (63), Expect = 3.0
Identities = 19/53 (35%), Positives = 21/53 (39%), Gaps = 3/53 (5%)
Frame = +2
Query: 26 GLPAGEEGHHPRHQGR---QGCRPAVRIGRRMHHPGSGRPRPALRPVQEGRLP 175
G P E G P GR + RP GR H PG P P + GR P
Sbjct: 110 GRPPHEPGRPPHEPGRPPHEPGRPPHEPGRPPHEPGRPPYEPGRPPHEPGRPP 162
>SB_17144| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 218
Score = 29.9 bits (64), Expect = 2.3
Identities = 13/31 (41%), Positives = 17/31 (54%)
Frame = -1
Query: 371 ERPQSPSGRGPGRARHQVRLRARQLARCVGS 279
ERP + R PGR RHQ ++Q C+ S
Sbjct: 154 ERPYTSKKRRPGRPRHQATTSSKQPISCLTS 184
>SB_31213| Best HMM Match : SNF2_N (HMM E-Value=0)
Length = 919
Score = 29.9 bits (64), Expect = 2.3
Identities = 22/60 (36%), Positives = 26/60 (43%), Gaps = 1/60 (1%)
Frame = -1
Query: 383 TRRPERPQSPSGRGPGRARHQVRLRARQLARCVGSDRWRRSGR-NIGVFLDSLVRGGVAA 207
T P + GRG GRAR + R R R A + + R R GR GV S AA
Sbjct: 793 TASPSTAEGKRGRGRGRARGRGRTRGRGTAP-IRTSRGRGRGRGGTGVMAASAAASAAAA 851
>SB_58036| Best HMM Match : Cadherin (HMM E-Value=0)
Length = 6074
Score = 29.1 bits (62), Expect = 4.0
Identities = 14/41 (34%), Positives = 22/41 (53%)
Frame = -2
Query: 154 WAQRWARSSRPWVVHSSSDPNSGTTPLSTLMPGMMPFFSSR 32
WAQ ++ SS PW S + SGT S+L ++ +S +
Sbjct: 5909 WAQNYSSSSSPWAPSSPASVRSGTYS-SSLATDILDTYSQK 5948
>SB_52129| Best HMM Match : Sec23_trunk (HMM E-Value=0)
Length = 942
Score = 28.7 bits (61), Expect = 5.2
Identities = 25/78 (32%), Positives = 38/78 (48%), Gaps = 5/78 (6%)
Frame = +2
Query: 20 PSGLP-AGEEGHHPRHQGRQGCRPAVRIGRRMHHPGSGRPRPALRPVQ--EGRLPLRQ-V 187
PSG P G+EG P+ G+ RP+ RR + G+P P+ GRL ++Q V
Sbjct: 333 PSGAPPTGDEGMAPQ-PGQGQARPSYMNKRRQYPAQGGQPGYGAMPLDGPMGRLTVQQPV 391
Query: 188 ALRAED-WPQHPLVPSYP 238
++ Q +VP+ P
Sbjct: 392 GVQPVSLMDQRHIVPTTP 409
>SB_48451| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2851
Score = 28.7 bits (61), Expect = 5.2
Identities = 25/80 (31%), Positives = 34/80 (42%), Gaps = 3/80 (3%)
Frame = -1
Query: 461 TTDRPSPCWA*GVSPRGTRGGRSAPYTRRPERPQSPSGRGPGRARHQVRLRAR---QLAR 291
+T+RP G RG GGR+ +SP+GRG GR R + R Q R
Sbjct: 1292 STERPRSANRIGRGVRGASGGRAL---------RSPAGRGFGRQRREQEKPPRFQKQQER 1342
Query: 290 CVGSDRWRRSGRNIGVFLDS 231
R GR+ G+ D+
Sbjct: 1343 AAAQQRGLGRGRSRGIGRDT 1362
>SB_57096| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 442
Score = 28.3 bits (60), Expect = 6.9
Identities = 18/41 (43%), Positives = 20/41 (48%)
Frame = -1
Query: 419 PRGTRGGRSAPYTRRPERPQSPSGRGPGRARHQVRLRARQL 297
P G R P R P R + PSGR P R RL +RQL
Sbjct: 371 PSGRLPSRRLPSGRLPSR-RFPSGRLPSRRLPSGRLPSRQL 410
>SB_30172| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 701
Score = 28.3 bits (60), Expect = 6.9
Identities = 16/47 (34%), Positives = 21/47 (44%)
Frame = -3
Query: 720 LLSGENVLGLPSPGAEHRSLEGAPVAERQNPGPLEVHSVDSVQMHRG 580
L +VLG P P R E P + R++ P V +VDS G
Sbjct: 345 LFDRSSVLGAPEPMPPIREKESPPGSPRKHRRPRPVKTVDSYDSQDG 391
>SB_40773| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 953
Score = 27.9 bits (59), Expect = 9.1
Identities = 18/72 (25%), Positives = 32/72 (44%), Gaps = 6/72 (8%)
Frame = +2
Query: 323 DGEHDLDRAQKVTEVVLAAVYKALND------HHVYLEGTLLKPNMVTAGQSCKKTYTPN 484
D + Q+ T L +Y + D ++E + KP+++T K T TP
Sbjct: 273 DNREHRETTQQATTEALVELYNHVKDMPDGPMKQKFMEKAM-KPSLLTYSTPIKSTCTPG 331
Query: 485 DVARATVTPSSA 520
+AR ++P +A
Sbjct: 332 SLARPPLSPINA 343
>SB_34438| Best HMM Match : Ribosomal_L23eN (HMM E-Value=2)
Length = 772
Score = 27.9 bits (59), Expect = 9.1
Identities = 17/34 (50%), Positives = 20/34 (58%)
Frame = -1
Query: 428 GVSPRGTRGGRSAPYTRRPERPQSPSGRGPGRAR 327
G SP G++G S YT P R SPSG GP +R
Sbjct: 592 GFSP-GSQGTPSQGYT--PNRLASPSGYGPSDSR 622
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,659,401
Number of Sequences: 59808
Number of extensions: 574261
Number of successful extensions: 2189
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 1864
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2176
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1998111622
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -