Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0856
         (740 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

M29490-1|AAA27725.1|  109|Apis mellifera protein ( Bee homeobox-...    23   2.3  
AY242387-1|AAO72539.2|  693|Apis mellifera prophenoloxidase prot...    23   3.0  
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    23   4.0  
AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor typ...    22   5.3  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              22   7.0  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    22   7.0  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    22   7.0  
AB050744-1|BAB17753.1|  238|Apis mellifera period protein protein.     22   7.0  

>M29490-1|AAA27725.1|  109|Apis mellifera protein ( Bee
           homeobox-containing gene,partial cds, clone E30. ).
          Length = 109

 Score = 23.4 bits (48), Expect = 2.3
 Identities = 12/33 (36%), Positives = 15/33 (45%)
 Frame = -1

Query: 389 PYTRRPERPQSPSGRGPGRARHQVRLRARQLAR 291
           P TRR +R  +     P   R +    A QLAR
Sbjct: 2   PRTRRVKRSHNGKNGSPEEKRPRTAFSAEQLAR 34


>AY242387-1|AAO72539.2|  693|Apis mellifera prophenoloxidase
           protein.
          Length = 693

 Score = 23.0 bits (47), Expect = 3.0
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = +2

Query: 206 WPQHPLVPSYPGKRQCFA 259
           WPQH L+P   G ++ FA
Sbjct: 583 WPQHMLIPK--GNKEGFA 598


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
            protein.
          Length = 1124

 Score = 22.6 bits (46), Expect = 4.0
 Identities = 11/21 (52%), Positives = 13/21 (61%)
 Frame = +3

Query: 237  QENANVSPATPPSVRANASCQ 299
            +ENA + PA PP V    SCQ
Sbjct: 1105 EENAPLPPALPPQV---VSCQ 1122



 Score = 21.8 bits (44), Expect = 7.0
 Identities = 10/35 (28%), Positives = 16/35 (45%)
 Frame = +3

Query: 603 QRCGPQEALGSDVQLRARPPGFGAPRLGREDREHS 707
           +RC    +   ++    R PGFG   L  ++R  S
Sbjct: 471 KRCKDLASFMGNLLQETRTPGFGKDVLATDERSFS 505


>AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor type
           D2 protein.
          Length = 456

 Score = 22.2 bits (45), Expect = 5.3
 Identities = 8/26 (30%), Positives = 14/26 (53%)
 Frame = -1

Query: 734 RLISSCCPARMFSVFPPQARSTEAWR 657
           R++ +CCP R+   + P  R   + R
Sbjct: 403 RILCACCPGRVRRRYQPAFRCKPSQR 428


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 21.8 bits (44), Expect = 7.0
 Identities = 13/43 (30%), Positives = 17/43 (39%)
 Frame = +2

Query: 26   GLPAGEEGHHPRHQGRQGCRPAVRIGRRMHHPGSGRPRPALRP 154
            G   G+ G    H G +G      +G   + P SG P P   P
Sbjct: 1821 GSQYGQYGAPYDHYGSRGSVGRRSVGSARNIPVSGSPEPPPPP 1863


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
            AbsCAM-Ig7B protein.
          Length = 1923

 Score = 21.8 bits (44), Expect = 7.0
 Identities = 17/53 (32%), Positives = 22/53 (41%)
 Frame = +3

Query: 207  GRNTPSYQAIQENANVSPATPPSVRANASCQLSSPKSYLMASTTWTAPRR*LR 365
            GR+ PS + I       PA PP    N   +  S    L+   TW+ P   LR
Sbjct: 989  GRSVPSAELIVRTEPQRPAGPP---INLEARALSSSEILI---TWSPPLPELR 1035


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
            AbsCAM-Ig7A protein.
          Length = 1919

 Score = 21.8 bits (44), Expect = 7.0
 Identities = 17/53 (32%), Positives = 22/53 (41%)
 Frame = +3

Query: 207  GRNTPSYQAIQENANVSPATPPSVRANASCQLSSPKSYLMASTTWTAPRR*LR 365
            GR+ PS + I       PA PP    N   +  S    L+   TW+ P   LR
Sbjct: 985  GRSVPSAELIVRTEPQRPAGPP---INLEARALSSSEILI---TWSPPLPELR 1031


>AB050744-1|BAB17753.1|  238|Apis mellifera period protein protein.
          Length = 238

 Score = 21.8 bits (44), Expect = 7.0
 Identities = 10/35 (28%), Positives = 16/35 (45%)
 Frame = +3

Query: 603 QRCGPQEALGSDVQLRARPPGFGAPRLGREDREHS 707
           +RC    +   ++    R PGFG   L  ++R  S
Sbjct: 177 KRCKDLASFMENLLQETRTPGFGKDVLATDERSFS 211


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 206,485
Number of Sequences: 438
Number of extensions: 4674
Number of successful extensions: 12
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23144850
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)