Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0855
         (688 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC31F10.13c |hip1|hir1|hira protein Hip1|Schizosaccharomyces p...    27   1.9  
SPBC25D12.05 |trm1||N2,N2-dimethylguanosine tRNA methyltransfera...    27   3.4  
SPCC1322.03 |||TRP-like ion channel|Schizosaccharomyces pombe|ch...    26   4.4  
SPBC646.03 |||glutamyl-tRNA amidotransferase|Schizosaccharomyces...    26   4.4  
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1...    26   5.9  

>SPBC31F10.13c |hip1|hir1|hira protein Hip1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 932

 Score = 27.5 bits (58), Expect = 1.9
 Identities = 18/50 (36%), Positives = 26/50 (52%)
 Frame = +3

Query: 264 P*GIHTTAPTEVPLSSSTDGTTMATPR*TLSSDPPSLPFKT*MSSLLTGT 413
           P  + TT PT VP SSST  +   TP+   +  P  L  +T  ++ LT +
Sbjct: 401 PSSLSTTDPTLVPQSSSTPKSAQKTPQKLPAFLPNRLTAETVDTNKLTAS 450


>SPBC25D12.05 |trm1||N2,N2-dimethylguanosine tRNA
           methyltransferase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 548

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 9/21 (42%), Positives = 12/21 (57%)
 Frame = -2

Query: 684 IRLNDQHCG*VR*ISSPLWSG 622
           +  N +HCG V  +  PLW G
Sbjct: 350 VSANCEHCGYVHHVGGPLWGG 370


>SPCC1322.03 |||TRP-like ion channel|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 862

 Score = 26.2 bits (55), Expect = 4.4
 Identities = 13/42 (30%), Positives = 22/42 (52%), Gaps = 2/42 (4%)
 Frame = +3

Query: 417 LLIQTTILPPLASRMSVAPSATFWFGSSTML--RQLEPSASY 536
           L +QT  +PP+    S+ PS      SS+++    + PS+ Y
Sbjct: 656 LFVQTNCIPPVTQASSLVPSKNNTASSSSLMLDSPVTPSSPY 697


>SPBC646.03 |||glutamyl-tRNA amidotransferase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 471

 Score = 26.2 bits (55), Expect = 4.4
 Identities = 17/56 (30%), Positives = 24/56 (42%)
 Frame = +3

Query: 261 TP*GIHTTAPTEVPLSSSTDGTTMATPR*TLSSDPPSLPFKT*MSSLLTGTDLLIQ 428
           TP   +++ P E P S S    TM  P         S+PF T  + L  G  ++ Q
Sbjct: 401 TPSFFNSSQPIETPSSYSHLSDTMLVPANMAGIPSVSIPFGTLNNGLPMGIQIMAQ 456


>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 800

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 22/72 (30%), Positives = 32/72 (44%), Gaps = 2/72 (2%)
 Frame = +3

Query: 273 IHTTAPTEVPLSSSTDGTTMATPR*TLSSDPPSLPFKT*MSSL-LTGTDLLIQT-TILPP 446
           + T +P E+  +S T  T+ +TP  T S+   S    T  SS  L  T     T T +PP
Sbjct: 64  LSTGSPVEITSTSCTTDTSASTPIITESTSSTSSASTTGSSSSPLPSTSTSCTTSTSIPP 123

Query: 447 LASRMSVAPSAT 482
                S++   T
Sbjct: 124 TGGSSSLSTPIT 135


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,005,123
Number of Sequences: 5004
Number of extensions: 64563
Number of successful extensions: 195
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 182
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 195
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 317927284
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)