Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= mg--0855
(688 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_02_1143 + 24659105-24659386,24660171-24660272,24661259-246615... 34 0.092
12_02_0674 - 21745321-21746223,21746229-21747608 33 0.16
05_03_0460 - 14294931-14295110,14295200-14295234,14295358-142954... 33 0.28
08_02_0636 + 19567654-19568859 29 2.6
07_01_0479 + 3606663-3607448 29 2.6
06_03_0024 - 15563574-15563632,15563887-15563914,15564017-155642... 29 4.6
10_05_0046 + 8516043-8516425,8517908-8518019,8518276-8518377,851... 28 6.0
09_04_0502 - 18163192-18163435,18164000-18164154,18164243-181644... 28 6.0
06_01_1175 - 10094144-10094387,10094573-10094730,10094851-100950... 28 6.0
01_03_0117 + 12684729-12685886,12685978-12686145,12686292-126863... 28 6.0
04_03_0857 + 20352331-20352582,20352740-20352951,20353047-203533... 28 8.0
>08_02_1143 +
24659105-24659386,24660171-24660272,24661259-24661521,
24661775-24661874,24662080-24662238,24662327-24663147,
24663299-24663618,24665831-24667398
Length = 1204
Score = 34.3 bits (75), Expect = 0.092
Identities = 21/69 (30%), Positives = 34/69 (49%), Gaps = 1/69 (1%)
Frame = -2
Query: 594 ATTGLASGITNDVST*TEANKMHLVPIASALLMSQTKKL-PRARPTSGTPAAAVL*FELA 418
A L + + + + + + +P +S+L+ S T+ L P+A PTS AA V +L
Sbjct: 498 APQALPTSVGSQIGGCSVDETLQALPASSSLISSNTENLSPQALPTSSESAAGVTIDDLR 557
Query: 417 SLCQSTTMT 391
SLC T
Sbjct: 558 SLCSQEFFT 566
>12_02_0674 - 21745321-21746223,21746229-21747608
Length = 760
Score = 33.5 bits (73), Expect = 0.16
Identities = 24/74 (32%), Positives = 34/74 (45%)
Frame = +3
Query: 258 STP*GIHTTAPTEVPLSSSTDGTTMATPR*TLSSDPPSLPFKT*MSSLLTGTDLLIQTTI 437
ST G ++ P+ PLS+ST T+ LSS +P L T TD + TT
Sbjct: 582 STATGKTSSTPSTSPLSTSTSKTSSTPSTSPLSSSTIKIPTTARTGELSTPTDKIPTTTR 641
Query: 438 LPPLASRMSVAPSA 479
L++ S P+A
Sbjct: 642 AGDLSTATSKIPTA 655
Score = 27.9 bits (59), Expect = 8.0
Identities = 31/96 (32%), Positives = 42/96 (43%), Gaps = 4/96 (4%)
Frame = +3
Query: 258 STP*GIHTTAPTEVPLSSSTDGTTMATPR*T-LSSDPPSLPFKT*MSSLLTGTDLLIQTT 434
ST G + P PLS++T +TPR + LSS +P L T T + TT
Sbjct: 518 STATGKIPSTPRTNPLSTAT-SKIPSTPRTSLLSSSTSKIPSTPSTCELSTATGKIPSTT 576
Query: 435 ILPPLAS---RMSVAPSATFWFGSSTMLRQLEPSAS 533
PL++ + S PS T +ST PS S
Sbjct: 577 CTSPLSTATGKTSSTPS-TSPLSTSTSKTSSTPSTS 611
>05_03_0460 -
14294931-14295110,14295200-14295234,14295358-14295457,
14295548-14295669,14296272-14296367,14296489-14298949
Length = 997
Score = 32.7 bits (71), Expect = 0.28
Identities = 21/74 (28%), Positives = 32/74 (43%)
Frame = +1
Query: 151 NPSTMNYWAPEAAPIISTGFSPDRTKTIARCL*TAHQLREEFTLPRQPRYRCHRPRMEQQ 330
+PS+ + AP + ++ P R A AH L +EF+ PR R R+ +
Sbjct: 9 SPSSRSLCAPRSFSFSTSASPPPRAPVPASPSYLAHHLLDEFSRPRATRDAARLRRLAAE 68
Query: 331 WQHPDEPSHQIRLP 372
P S +RLP
Sbjct: 69 LTAPAAESVLLRLP 82
>08_02_0636 + 19567654-19568859
Length = 401
Score = 29.5 bits (63), Expect = 2.6
Identities = 14/41 (34%), Positives = 26/41 (63%)
Frame = +3
Query: 249 NGTSTP*GIHTTAPTEVPLSSSTDGTTMATPR*TLSSDPPS 371
+GTS + T P+ VP+++S D +++++P T +D PS
Sbjct: 181 HGTSLLMAVSTALPSSVPITTSLDASSISSP--TYVNDVPS 219
>07_01_0479 + 3606663-3607448
Length = 261
Score = 29.5 bits (63), Expect = 2.6
Identities = 12/29 (41%), Positives = 15/29 (51%)
Frame = -3
Query: 650 VRFPPHCGPAGSKPVTRAGRPPAWRPALP 564
+R PP GP +P G PP RP +P
Sbjct: 209 MRGPPPMGPPQVRPGMPGGPPPGMRPGMP 237
>06_03_0024 -
15563574-15563632,15563887-15563914,15564017-15564202,
15564283-15564332,15564435-15564691,15564772-15564910,
15565627-15565716,15567354-15567663
Length = 372
Score = 28.7 bits (61), Expect = 4.6
Identities = 14/43 (32%), Positives = 21/43 (48%)
Frame = +1
Query: 262 LREEFTLPRQPRYRCHRPRMEQQWQHPDEPSHQIRLPCRSRRE 390
+ + F P QP +R P + + PDEP H+ P S+ E
Sbjct: 177 IHQSFEEPDQPVHRTETPALGYHAE-PDEPIHRTEAPALSQPE 218
>10_05_0046 +
8516043-8516425,8517908-8518019,8518276-8518377,
8518605-8518657,8518976-8519062,8519162-8519830,
8520154-8520214,8520295-8520342
Length = 504
Score = 28.3 bits (60), Expect = 6.0
Identities = 11/27 (40%), Positives = 16/27 (59%)
Frame = +2
Query: 167 ITGLQKRRQ*SVLAFHQTEPKQSPGAC 247
+TG +KR+ +V F Q +P Q G C
Sbjct: 384 VTGAKKRKSGNVRRFEQNKPTQGQGEC 410
>09_04_0502 -
18163192-18163435,18164000-18164154,18164243-18164447,
18164530-18164819,18164845-18164853,18164920-18165085,
18165170-18165258,18165365-18165432,18165843-18166164
Length = 515
Score = 28.3 bits (60), Expect = 6.0
Identities = 14/32 (43%), Positives = 20/32 (62%)
Frame = +3
Query: 9 ALAGLVTLCSGVAIPTIPGDNSHYVEGESRYI 104
AL +V+L S + IPT G+ + VEG RY+
Sbjct: 406 ALDYIVSLESDIFIPTYDGNMAKVVEGHRRYL 437
>06_01_1175 -
10094144-10094387,10094573-10094730,10094851-10095055,
10095184-10095473,10095605-10095770,10095872-10095960,
10096060-10096127,10097185-10097473
Length = 502
Score = 28.3 bits (60), Expect = 6.0
Identities = 14/32 (43%), Positives = 20/32 (62%)
Frame = +3
Query: 9 ALAGLVTLCSGVAIPTIPGDNSHYVEGESRYI 104
AL LV+L S + +PT G+ + VEG RY+
Sbjct: 393 ALDYLVSLESDIFVPTYDGNMAKVVEGHRRYM 424
>01_03_0117 +
12684729-12685886,12685978-12686145,12686292-12686336,
12686438-12687280
Length = 737
Score = 28.3 bits (60), Expect = 6.0
Identities = 16/31 (51%), Positives = 18/31 (58%)
Frame = -3
Query: 641 PPHCGPAGSKPVTRAGRPPAWRPALPTT*AP 549
PP P+ S T + PPA RPALP T AP
Sbjct: 138 PPAKAPSHSHAKTPS-MPPAERPALPPTKAP 167
>04_03_0857 +
20352331-20352582,20352740-20352951,20353047-20353308,
20353418-20353726
Length = 344
Score = 27.9 bits (59), Expect = 8.0
Identities = 13/40 (32%), Positives = 20/40 (50%)
Frame = +1
Query: 529 HLIGFSLGAHVVGNAGRQAGGRPARVTGLDPAGPQWGGNL 648
+L+GFS+G ++ + + R A V L P G W L
Sbjct: 134 YLMGFSMGGEIMWSCLKHISHRLAGVAILGPVGNYWWSGL 173
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,519,807
Number of Sequences: 37544
Number of extensions: 510667
Number of successful extensions: 1620
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1562
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1620
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1744894544
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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