Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0855
         (688 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ244074-1|ABB36784.1|  517|Apis mellifera cytochrome P450 monoo...    25   0.89 
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             23   2.7  
DQ666693-1|ABG29167.1|  250|Apis mellifera MAX dimerization prot...    23   3.6  
AJ780964-1|CAG62942.2|  332|Apis mellifera putative corticotropi...    22   4.8  
EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage prot...    22   6.3  
AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic ac...    21   8.3  

>DQ244074-1|ABB36784.1|  517|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 517

 Score = 24.6 bits (51), Expect = 0.89
 Identities = 9/16 (56%), Positives = 11/16 (68%)
 Frame = +2

Query: 275 SHYRANRGTVVIVHGW 322
           S YR   GTVV++H W
Sbjct: 409 SGYRLTAGTVVLLHTW 424


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 23.0 bits (47), Expect = 2.7
 Identities = 15/29 (51%), Positives = 19/29 (65%), Gaps = 1/29 (3%)
 Frame = +3

Query: 258 STP*GIHTT-APTEVPLSSSTDGTTMATP 341
           STP  + TT A T +P +S+T GT  ATP
Sbjct: 214 STPATVTTTGATTTLPAASAT-GTGPATP 241



 Score = 22.6 bits (46), Expect = 3.6
 Identities = 8/25 (32%), Positives = 15/25 (60%)
 Frame = +1

Query: 286  RQPRYRCHRPRMEQQWQHPDEPSHQ 360
            +QP+ +  +P+ +QQ Q   +P  Q
Sbjct: 1522 QQPQQQQPQPQQQQQQQQQQQPQQQ 1546


>DQ666693-1|ABG29167.1|  250|Apis mellifera MAX dimerization protein
           protein.
          Length = 250

 Score = 22.6 bits (46), Expect = 3.6
 Identities = 11/17 (64%), Positives = 12/17 (70%)
 Frame = +3

Query: 306 SSSTDGTTMATPR*TLS 356
           SSS  G TM+T R TLS
Sbjct: 228 SSSDSGVTMSTSRLTLS 244


>AJ780964-1|CAG62942.2|  332|Apis mellifera putative corticotropin
           releasing hormone-binding protein protein.
          Length = 332

 Score = 22.2 bits (45), Expect = 4.8
 Identities = 8/15 (53%), Positives = 10/15 (66%)
 Frame = +2

Query: 290 NRGTVVIVHGWNNNG 334
           +RG V I+ GW  NG
Sbjct: 117 HRGLVSIIDGWELNG 131


>EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage protein
           protein.
          Length = 1010

 Score = 21.8 bits (44), Expect = 6.3
 Identities = 9/27 (33%), Positives = 14/27 (51%)
 Frame = +1

Query: 250 TAHQLREEFTLPRQPRYRCHRPRMEQQ 330
           T HQ +++     Q R R H  R++ Q
Sbjct: 490 TGHQSQQQQEEQTQSRVRAHLKRLDHQ 516


>AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic
           acetylcholine receptorApisa2 subunit protein.
          Length = 541

 Score = 21.4 bits (43), Expect = 8.3
 Identities = 10/45 (22%), Positives = 16/45 (35%)
 Frame = +2

Query: 389 NVIVVDWHRLANSNYNTAAAGVPDVGRALGNFLVWLINNAEAIGT 523
           NV+ +  H      +N        V   L    +W+   A  +GT
Sbjct: 457 NVMFIQHHIQRQDEFNAEDQDWGFVAMVLDRLFLWIFTIASIVGT 501


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 209,317
Number of Sequences: 438
Number of extensions: 4996
Number of successful extensions: 13
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20952180
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)