Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= mg--0855
(688 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g01430.1 68416.m00066 expressed protein 30 1.3
At2g31710.1 68415.m03870 expressed protein 30 1.3
At1g20130.1 68414.m02518 family II extracellular lipase, putativ... 30 1.3
At1g14020.1 68414.m01656 expressed protein contains Pfam PF03138... 30 1.7
At5g11990.1 68418.m01402 proline-rich family protein contains pr... 29 2.2
At2g03280.1 68415.m00282 expressed protein contains Pfam PF03138... 29 2.9
At1g25300.1 68414.m03140 octicosapeptide/Phox/Bem1p (PB1) domain... 28 5.0
At5g14890.1 68418.m01746 NHL repeat-containing protein contains ... 28 6.7
At2g21950.1 68415.m02608 SKP1 interacting partner 6 (SKIP6) iden... 28 6.7
At3g53580.1 68416.m05918 diaminopimelate epimerase family protei... 27 8.8
>At3g01430.1 68416.m00066 expressed protein
Length = 180
Score = 30.3 bits (65), Expect = 1.3
Identities = 22/81 (27%), Positives = 33/81 (40%), Gaps = 2/81 (2%)
Frame = +3
Query: 435 ILPPLASRMSVAPSATFWFGSSTMLRQLEPSASYWLQ-FRCSRRW-*CRTPSRWSPRTRY 608
++P LAS + W+ T + +LEP +W++ +R R W RW R
Sbjct: 30 LMPCLASSQPSTRGGSVWWQRITTVDKLEPDERWWIRGWRRMREWSELVAGPRWKTYIR- 88
Query: 609 RFGPRRTTVGRKSNALNRNAG 671
RFG G N + G
Sbjct: 89 RFGRSNCCGGGGGRVGNSSGG 109
>At2g31710.1 68415.m03870 expressed protein
Length = 105
Score = 30.3 bits (65), Expect = 1.3
Identities = 18/46 (39%), Positives = 30/46 (65%), Gaps = 6/46 (13%)
Frame = +2
Query: 302 VVIVHGWNNN---GNTQMNP---LIRSAFLAVQDVNVIVVDWHRLA 421
+ I++G+NN+ G+T ++P + S FLAV VNV++V + LA
Sbjct: 20 IAILYGFNNDLLPGSTTLSPHSLTLLSGFLAVVSVNVVIVFYICLA 65
>At1g20130.1 68414.m02518 family II extracellular lipase, putative
contains Pfam profile PF00657: GDSL-like
Lipase/Acylhydrolase; similar to EXL3 (PMID:11431566)
Length = 1006
Score = 30.3 bits (65), Expect = 1.3
Identities = 15/38 (39%), Positives = 18/38 (47%)
Frame = -3
Query: 641 PPHCGPAGSKPVTRAGRPPAWRPALPTT*APKLKPIRC 528
PP C P KP + PP +PA P P KP+ C
Sbjct: 65 PPACPPTPPKPQPKPAPPPEPKPAPP----PAPKPVPC 98
>At1g14020.1 68414.m01656 expressed protein contains Pfam PF03138:
Plant protein family. The function of this family of
plant proteins is unknown; previously annotated as
'growth regulator protein -related' based on similarity
to axi 1 protein (GB:X80301) (GI:559920) from [Nicotiana
tabacum], which, due to scienitific fraud was retracted.
Retraction in: Schell J. EMBO J 1999 May 17;18(10):2908.
PMID:10400497.
Length = 499
Score = 29.9 bits (64), Expect = 1.7
Identities = 18/52 (34%), Positives = 29/52 (55%), Gaps = 5/52 (9%)
Frame = +3
Query: 9 ALAGLVTLCSGVAIPTIPGDNSHYVEGESRYIW-----MPDGEGVPQLVDLH 149
AL +V++ S IPT G+ + VEG RY+ + D + + +L+DLH
Sbjct: 382 ALDFMVSVASNTFIPTYDGNMAKVVEGHRRYLGYKKTILLDRKRLVELLDLH 433
>At5g11990.1 68418.m01402 proline-rich family protein contains
proline-rich extensin domains, INTERPRO:IPR002965
Length = 181
Score = 29.5 bits (63), Expect = 2.2
Identities = 16/49 (32%), Positives = 25/49 (51%), Gaps = 1/49 (2%)
Frame = -3
Query: 680 DLMTSIAV-ECVRFPPHCGPAGSKPVTRAGRPPAWRPALPTT*APKLKP 537
+++T + + EC P C P SKP PP+ P+LP + +P P
Sbjct: 25 NVLTPLCISECSTCPTICSPPPSKPSPSMSPPPS--PSLPLSSSPPPPP 71
>At2g03280.1 68415.m00282 expressed protein contains Pfam PF03138:
Plant protein family. The function of this family of
plant proteins is unknown; previously annotated as ' axi
1 protein from Nicotiana tabacum -related' based on
similarity to axi 1 protein (GB:X80301) (GI:559920) from
[Nicotiana tabacum], which, due to scienitific fraud was
retracted. Retraction in: Schell J. EMBO J 1999 May
17;18(10):2908. PMID:10400497.
Length = 481
Score = 29.1 bits (62), Expect = 2.9
Identities = 18/52 (34%), Positives = 29/52 (55%), Gaps = 5/52 (9%)
Frame = +3
Query: 9 ALAGLVTLCSGVAIPTIPGDNSHYVEGESRYIW-----MPDGEGVPQLVDLH 149
AL +V++ S IPT G+ + VEG RY+ + D + + +L+DLH
Sbjct: 379 ALDFIVSVASNTFIPTYYGNMAKVVEGHRRYLGFKKTILLDRKRLVELLDLH 430
>At1g25300.1 68414.m03140 octicosapeptide/Phox/Bem1p (PB1)
domain-containing protein similar to unknown protein
GI:4262226 from [Arabidopsis thaliana] contains Pfam
profile PF00564: PB1 domain
Length = 272
Score = 28.3 bits (60), Expect = 5.0
Identities = 18/54 (33%), Positives = 28/54 (51%), Gaps = 2/54 (3%)
Frame = +3
Query: 30 LCS--GVAIPTIPGDNSHYVEGESRYIWMPDGEGVPQLVDLHEPIDYELLGSRS 185
LCS G +P P + HY+ GE+R + +P G +D + + +LL RS
Sbjct: 14 LCSYGGRIMPLPPEKSLHYIGGETRLVIVPRG---ISFLDFFKLLSDKLLSGRS 64
>At5g14890.1 68418.m01746 NHL repeat-containing protein contains
Pfam profile PF01436: NHL repeat
Length = 754
Score = 27.9 bits (59), Expect = 6.7
Identities = 21/78 (26%), Positives = 30/78 (38%), Gaps = 2/78 (2%)
Frame = +3
Query: 435 ILPPLASRMSVAPSATFWFGSSTMLRQLEPSASYWLQ-FRCSRRW-*CRTPSRWSPRTRY 608
ILP L S P+ + W+ + +LEP +W+ + R W +W R
Sbjct: 613 ILPCLGSSQPSGPNGSVWWQRIRTVDKLEPDERWWVSGWMKMREWSEIVAGPKWKTFIR- 671
Query: 609 RFGPRRTTVGRKSNALNR 662
RFG G NR
Sbjct: 672 RFGRNHCCNGGIDGGCNR 689
>At2g21950.1 68415.m02608 SKP1 interacting partner 6 (SKIP6)
identical to SKP1 interacting partner 6 GI:10716957 from
[Arabidopsis thaliana]
Length = 372
Score = 27.9 bits (59), Expect = 6.7
Identities = 23/101 (22%), Positives = 38/101 (37%), Gaps = 11/101 (10%)
Frame = -2
Query: 363 DLMRGFIWVLPLLFHPWTMTTVPRLAR*CEFLTELMCRSQAPGDCFGSVW*KAST----- 199
D+ +WVL FH W + R+ R + + G C W ++
Sbjct: 137 DVPSSSVWVLDCRFHTWRRVSNMRVGREFAAAGVIDGKIYVIGGCVVDNWARSINWAEMF 196
Query: 198 DYWRRFWSPV------IHSRWVHAGPLAAEHLHHQASRCNG 94
D + W PV + +W+HA + ++ A R NG
Sbjct: 197 DIKTQTWEPVASPGMEVREKWMHASAVMEGKVYAMADR-NG 236
>At3g53580.1 68416.m05918 diaminopimelate epimerase family protein
contains Pfam profile PF01678: Diaminopimelate epimerase
Length = 362
Score = 27.5 bits (58), Expect = 8.8
Identities = 13/44 (29%), Positives = 18/44 (40%)
Frame = -1
Query: 382 LNGKEGGSDERVHLGVAIVVPSVDDDNGTSVGAVV*IPHGVDVP 251
L +G +H G ++VP + DD V I DVP
Sbjct: 164 LENLQGKHSFTIHTGAGLIVPEIQDDGQVKVDMGTPILKAQDVP 207
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,292,133
Number of Sequences: 28952
Number of extensions: 366837
Number of successful extensions: 1031
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 975
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1031
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1457719448
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -