Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= mg--0854
(558 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC342.02 |||glutaminyl-tRNA synthetase |Schizosaccharomyces po... 29 0.35
SPCC24B10.02c |||NAD/NADH kinase|Schizosaccharomyces pombe|chr 3... 27 1.9
SPAC20G8.06 |||CCR4-Not complex subunit Not1 |Schizosaccharomyce... 27 2.5
SPAC26A3.05 |chc1||clathrin heavy chain Chc1 |Schizosaccharomyce... 26 4.3
SPCC132.04c |||NAD-dependent glutamate dehydrogenase |Schizosacc... 25 5.7
SPBC13G1.10c |mug81||ATP-dependent RNA helicase Slh1|Schizosacch... 25 5.7
SPBC725.14 |arg6||acetylglutamate synthase Arg6 |Schizosaccharom... 25 7.5
SPAC105.03c |||transcription factor |Schizosaccharomyces pombe|c... 25 7.5
SPBC21D10.10 |||bromodomain protein|Schizosaccharomyces pombe|ch... 25 10.0
SPBC19C2.11c |||mitochondrial outer membrane protein |Schizosacc... 25 10.0
SPBC4F6.10 |vps901|vps9a|guanyl-nucleotide exchange factor Vps90... 25 10.0
>SPBC342.02 |||glutaminyl-tRNA synthetase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 811
Score = 29.5 bits (63), Expect = 0.35
Identities = 26/80 (32%), Positives = 37/80 (46%), Gaps = 1/80 (1%)
Frame = +1
Query: 259 ALENVVAEATASVSLADNIIVSDIGAAITIGDVKSNLQINLFGREVGPAVNNFLEKIPVY 438
A E +A S L N+ + AAIT K + + F +E G V E+I
Sbjct: 74 AHEAFIASKIVSGDLKTNL---QVNAAITYCKDKDTIDESEFDKETGVGVVLTPEQIEQL 130
Query: 439 LTDYAAE-VSRVLEYVAQLV 495
+ DY AE S++LE QL+
Sbjct: 131 VGDYVAENKSKILEQRYQLL 150
>SPCC24B10.02c |||NAD/NADH kinase|Schizosaccharomyces pombe|chr
3|||Manual
Length = 449
Score = 27.1 bits (57), Expect = 1.9
Identities = 14/40 (35%), Positives = 25/40 (62%), Gaps = 1/40 (2%)
Frame = +1
Query: 337 AITIGDVKSNLQINLFGREVGPAVNNFL-EKIPVYLTDYA 453
AITIGD + L + +++GP V +F + +P +LT ++
Sbjct: 178 AITIGDNSTLLYTSWLFQKIGPPVLSFSDDDVPGFLTHFS 217
>SPAC20G8.06 |||CCR4-Not complex subunit Not1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 2100
Score = 26.6 bits (56), Expect = 2.5
Identities = 18/82 (21%), Positives = 37/82 (45%), Gaps = 2/82 (2%)
Frame = -1
Query: 333 SDVTDNDVVCEGDGSGSLSNDVLKGKSPEAKDLRTRLKMRISPSAEPTD--AETLGTART 160
S++ N +V + D L DVL + P+ D+ T+ + S TD A+ G +
Sbjct: 1070 SEMYRNHLVQKADLEKELPEDVLNAEFPDGTDVITQYIVAASSQITVTDAVAQVFGKPKP 1129
Query: 159 KLSRVPT*LTRRKCRELKSSAL 94
+ + + ++ E+ S+ +
Sbjct: 1130 AIKNITQLIIQQSVLEIISAVV 1151
>SPAC26A3.05 |chc1||clathrin heavy chain Chc1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1666
Score = 25.8 bits (54), Expect = 4.3
Identities = 28/86 (32%), Positives = 44/86 (51%), Gaps = 4/86 (4%)
Frame = +1
Query: 247 FRRLALENVVAEATASVSLADNIIVSDIGAAITIGDVKSNLQINLFGREV----GPAVNN 414
+RR L+ V+A A S D VS + A+ D+ S L I L + V + N
Sbjct: 962 YRRPLLDQVIATAVPESS--DPEAVSIVVKALMEVDLPSQL-IELLEKIVLQPSSFSENA 1018
Query: 415 FLEKIPVYLTDYAAEVSRVLEYVAQL 492
L+ + ++LT A+ SRV+EY+ +L
Sbjct: 1019 NLQNL-LFLTAIKADKSRVMEYIDKL 1043
>SPCC132.04c |||NAD-dependent glutamate dehydrogenase
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1106
Score = 25.4 bits (53), Expect = 5.7
Identities = 10/30 (33%), Positives = 16/30 (53%)
Frame = +1
Query: 424 KIPVYLTDYAAEVSRVLEYVAQLVINRLRK 513
K+P + DY EV R+++ A L + K
Sbjct: 968 KVPTFYADYVNEVKRIIQRNANLEFEAIWK 997
>SPBC13G1.10c |mug81||ATP-dependent RNA helicase
Slh1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1935
Score = 25.4 bits (53), Expect = 5.7
Identities = 12/41 (29%), Positives = 24/41 (58%)
Frame = +1
Query: 379 LFGREVGPAVNNFLEKIPVYLTDYAAEVSRVLEYVAQLVIN 501
+ R++GP V F+ K+P L + ++ + + V +LV+N
Sbjct: 972 IHNRKMGPTVKKFISKLP--LLNINVDLLPLTKNVLRLVLN 1010
>SPBC725.14 |arg6||acetylglutamate synthase Arg6
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 500
Score = 25.0 bits (52), Expect = 7.5
Identities = 9/14 (64%), Positives = 11/14 (78%)
Frame = -2
Query: 386 PKRLIWRLDLTSPI 345
PK LIWR LT+P+
Sbjct: 436 PKELIWRSRLTNPV 449
>SPAC105.03c |||transcription factor |Schizosaccharomyces pombe|chr
1|||Manual
Length = 708
Score = 25.0 bits (52), Expect = 7.5
Identities = 10/36 (27%), Positives = 20/36 (55%)
Frame = +1
Query: 211 NPHFQPRPEVFRFRRLALENVVAEATASVSLADNII 318
+P ++P ++ R+ +L V EAT S + + +I
Sbjct: 276 DPAYEPHKQIARYEKLQQIFQVVEATVSPEVGERLI 311
>SPBC21D10.10 |||bromodomain protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 299
Score = 24.6 bits (51), Expect = 10.0
Identities = 18/88 (20%), Positives = 41/88 (46%)
Frame = -1
Query: 483 DVLQNTADLGCVVRQVDRDLL*EVVDGWSNFASEEIDLEVRFDIANSYCSSDVTDNDVVC 304
++ TA+ ++ +++D L ++V+ W + +++ + S+ V+ ND
Sbjct: 26 ELFNRTAESSLLLEPIEQDQLKDLVEEWMHDSNKS---------DSKLLSNQVSQNDNDA 76
Query: 303 EGDGSGSLSNDVLKGKSPEAKDLRTRLK 220
+ L NDVLK + E + +L+
Sbjct: 77 RKNLRKRLRNDVLKDLAEEIQGCEKKLE 104
>SPBC19C2.11c |||mitochondrial outer membrane protein
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 452
Score = 24.6 bits (51), Expect = 10.0
Identities = 10/24 (41%), Positives = 13/24 (54%)
Frame = +2
Query: 479 TSPNSSSTDYVNYSNDTCESKINY 550
TSPN S T NY+ D + +Y
Sbjct: 214 TSPNQSHTSLANYNPDLLDGPPDY 237
>SPBC4F6.10 |vps901|vps9a|guanyl-nucleotide exchange factor Vps901
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 537
Score = 24.6 bits (51), Expect = 10.0
Identities = 14/48 (29%), Positives = 25/48 (52%)
Frame = +1
Query: 364 NLQINLFGREVGPAVNNFLEKIPVYLTDYAAEVSRVLEYVAQLVINRL 507
N Q+ L R+ +N +E+ + + AE+ E + +LV+NRL
Sbjct: 149 NYQVKLI-RDFLKFINEKIEQYEPWASGSQAEIDNAKEGMEKLVLNRL 195
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,946,096
Number of Sequences: 5004
Number of extensions: 34586
Number of successful extensions: 124
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 121
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 123
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 233995432
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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