Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= mg--0854
(558 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
10_08_0452 - 18038182-18038253,18038338-18038415,18038502-180385... 31 0.62
12_01_0204 + 1539859-1540158 30 1.1
05_01_0019 - 129767-129931,130078-130257,130491-130728,130833-13... 29 2.5
11_05_0050 + 18665251-18665613,18667280-18667744,18668548-186690... 29 3.3
12_02_0820 + 23437811-23440230,23440336-23440534 28 4.4
11_01_0417 - 3214320-3214435,3214606-3214702,3214766-3214768,321... 27 7.7
07_01_1032 - 8947594-8947769,8947885-8948601,8948973-8949049,894... 27 7.7
06_03_0291 + 19198302-19198333,19199218-19199734,19200171-192003... 27 7.7
05_06_0263 + 26752759-26754393 27 7.7
>10_08_0452 -
18038182-18038253,18038338-18038415,18038502-18038579,
18039112-18039168,18039276-18039349,18039424-18039495,
18039609-18039670,18039861-18039962,18040378-18040490,
18040809-18040940,18041156-18041243,18041617-18041711,
18041793-18042023,18042567-18042680,18042765-18042866,
18043091-18043207,18043301-18044146
Length = 810
Score = 31.1 bits (67), Expect = 0.62
Identities = 23/82 (28%), Positives = 35/82 (42%)
Frame = -1
Query: 294 GSGSLSNDVLKGKSPEAKDLRTRLKMRISPSAEPTDAETLGTARTKLSRVPT*LTRRKCR 115
G G S V G PEAK+ + K + + T + G + K R P+ T+ K
Sbjct: 84 GEGKRSESVAAGAKPEAKEKPSPKKPKTLGAKSDTKSSAEGVEKEK-RRSPS-PTKAKAL 141
Query: 114 ELKSSALTSVTRPEKLMMSDAP 49
+S + + P+K DAP
Sbjct: 142 ASESQDIKKPSSPKKTKALDAP 163
>12_01_0204 + 1539859-1540158
Length = 99
Score = 30.3 bits (65), Expect = 1.1
Identities = 12/27 (44%), Positives = 17/27 (62%)
Frame = +2
Query: 26 YAGSWSPPGASDIINFSGRVTDVKADD 106
+AGSW+ G + +F GRVT V+ D
Sbjct: 38 HAGSWNGEGQGGLAHFGGRVTRVRRGD 64
>05_01_0019 -
129767-129931,130078-130257,130491-130728,130833-131236,
131284-131427,131709-131995,132071-132150,132563-132714,
132793-132909,133292-133450,133546-133946,134106-134423,
135050-135095,135203-135310
Length = 932
Score = 29.1 bits (62), Expect = 2.5
Identities = 13/57 (22%), Positives = 26/57 (45%)
Frame = -1
Query: 360 FDIANSYCSSDVTDNDVVCEGDGSGSLSNDVLKGKSPEAKDLRTRLKMRISPSAEPT 190
F+ + D D D+ C G G +ND +KG + ++++ S + +P+
Sbjct: 213 FEFTGMSTNQDDADEDIFCTGGGMELENNDSVKGDKVQDGSFKSQISSGHSINKQPS 269
>11_05_0050 +
18665251-18665613,18667280-18667744,18668548-18669037,
18669115-18669143
Length = 448
Score = 28.7 bits (61), Expect = 3.3
Identities = 14/49 (28%), Positives = 24/49 (48%), Gaps = 3/49 (6%)
Frame = -1
Query: 330 DVTDNDVVCEG---DGSGSLSNDVLKGKSPEAKDLRTRLKMRISPSAEP 193
D+ +NDVVC G +L + ++ G+SP + L +P+ P
Sbjct: 337 DIVNNDVVCSGFLPTAEPTLRDGIVAGESPSTQHLSNATTEAKTPTKSP 385
>12_02_0820 + 23437811-23440230,23440336-23440534
Length = 872
Score = 28.3 bits (60), Expect = 4.4
Identities = 18/65 (27%), Positives = 31/65 (47%), Gaps = 1/65 (1%)
Frame = -1
Query: 495 DELGDVLQNTADLGC-VVRQVDRDLL*EVVDGWSNFASEEIDLEVRFDIANSYCSSDVTD 319
D+L +Q+ ++ VR + + + ++ WS+ EEI DI + Y S D
Sbjct: 252 DKLATYMQDIFNITAKAVRGDEESVALQAIEFWSSICDEEI------DILDEYSSEFTAD 305
Query: 318 NDVVC 304
+DV C
Sbjct: 306 SDVPC 310
>11_01_0417 -
3214320-3214435,3214606-3214702,3214766-3214768,
3215054-3215196,3215309-3215348,3215713-3215765,
3215889-3215962,3216081-3216163,3216287-3216355,
3216456-3216800
Length = 340
Score = 27.5 bits (58), Expect = 7.7
Identities = 24/85 (28%), Positives = 41/85 (48%), Gaps = 1/85 (1%)
Frame = -1
Query: 498 DDELGDVLQNTADLGCVVRQVDRDLL*EVVDGWSNFASEEIDLEVRFDIANSYCSSDVTD 319
+DEL +LQ+ AD+ + + + V+G S E+ L V+ + + ++ D
Sbjct: 117 EDELLSLLQSLADMDITYKALQETDIGRHVNGLRKHPSGEVRLLVK-QLIRKW--KEIVD 173
Query: 318 NDVVCEGDGSGSLSNDVL-KGKSPE 247
D V + SG SN ++ G SPE
Sbjct: 174 -DWVRLHNSSGDASNSIITDGNSPE 197
>07_01_1032 -
8947594-8947769,8947885-8948601,8948973-8949049,
8949264-8949655,8949746-8950002,8950234-8950921
Length = 768
Score = 27.5 bits (58), Expect = 7.7
Identities = 16/33 (48%), Positives = 18/33 (54%), Gaps = 1/33 (3%)
Frame = -1
Query: 300 GDGSGSLSNDVLKGKS-PEAKDLRTRLKMRISP 205
GDGSGS + +GKS P A LR R SP
Sbjct: 130 GDGSGSAQPEARRGKSNPIANLLRRATSQRESP 162
>06_03_0291 +
19198302-19198333,19199218-19199734,19200171-19200383,
19201067-19201111,19201671-19201945,19202041-19202152,
19202453-19202539,19202727-19202963,19204127-19204825
Length = 738
Score = 27.5 bits (58), Expect = 7.7
Identities = 18/51 (35%), Positives = 24/51 (47%)
Frame = -2
Query: 434 TGIFSRKLLTAGPTSRPKRLIWRLDLTSPIVIAAPMSLTMMLSARETEAVA 282
TG F+ +L G + L W LD TS V + P S + + E EA A
Sbjct: 564 TGFFNSDVLKGGDFCGEELLTWALDPTS--VSSLPSSTRTVKTMSEVEAFA 612
>05_06_0263 + 26752759-26754393
Length = 544
Score = 27.5 bits (58), Expect = 7.7
Identities = 16/38 (42%), Positives = 23/38 (60%), Gaps = 4/38 (10%)
Frame = +1
Query: 358 KSNLQINLFGREVGPAVNNFLEKIP----VYLTDYAAE 459
K +L+ NLFG E G A++ L K+P +YL+D E
Sbjct: 331 KLDLRDNLFGVEAGLALSKTLSKLPDLVELYLSDLNLE 368
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,390,761
Number of Sequences: 37544
Number of extensions: 255837
Number of successful extensions: 896
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 875
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 896
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1269546012
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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