Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0854
         (558 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_50401| Best HMM Match : Pkinase (HMM E-Value=1.7e-16)               30   1.1  
SB_38604| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   1.9  
SB_14276| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.6  
SB_14604| Best HMM Match : PT (HMM E-Value=5.1)                        29   2.6  

>SB_50401| Best HMM Match : Pkinase (HMM E-Value=1.7e-16)
          Length = 535

 Score = 30.3 bits (65), Expect = 1.1
 Identities = 26/79 (32%), Positives = 34/79 (43%), Gaps = 2/79 (2%)
 Frame = -1

Query: 369 EVRFDIANSYCSSDVTDNDVVCEGDGSGSLSNDVLKGK--SPEAKDLRTRLKMRISPSAE 196
           E+R  I N + +     +  V   D    LSN   K    SP++  L TR   R+SP  E
Sbjct: 114 EIREYIRNLFIALKRVHSFQVIHRDVKPRLSNGKYKSTAISPKSSKLPTRRSTRLSPQIE 173

Query: 195 PTDAETLGTARTKLSRVPT 139
             D +   T  T LSR  T
Sbjct: 174 NKDLDYSATGAT-LSRANT 191


>SB_38604| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 281

 Score = 29.5 bits (63), Expect = 1.9
 Identities = 18/59 (30%), Positives = 29/59 (49%)
 Frame = -1

Query: 333 SDVTDNDVVCEGDGSGSLSNDVLKGKSPEAKDLRTRLKMRISPSAEPTDAETLGTARTK 157
           +D  D+DVV   D S   SN   +G S + KDL    +++   S E T  + +   R++
Sbjct: 210 NDDDDDDVVDRNDVSSGTSNRS-EGSSKKGKDLHASKEVKKGVSKEDTKDDNMNMIRSR 267


>SB_14276| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 253

 Score = 29.1 bits (62), Expect = 2.6
 Identities = 16/49 (32%), Positives = 26/49 (53%)
 Frame = -2

Query: 308 SARETEAVASATTFSRASLRKRKTSGRG*KCGFLLQRNRLMLKLWEQPG 162
           ++R  E VA   TF   +LR+ K +     CG LL   ++ +++ E PG
Sbjct: 26  ASRRKEVVA--LTFRALALRRIKNNNEFGFCGLLLSSYKMQVRVLESPG 72


>SB_14604| Best HMM Match : PT (HMM E-Value=5.1)
          Length = 344

 Score = 29.1 bits (62), Expect = 2.6
 Identities = 27/83 (32%), Positives = 39/83 (46%), Gaps = 5/83 (6%)
 Frame = -1

Query: 249 EAKDLRTRLKMRISPSAEPTD-AETLGTARTKLSRVPT*LTRRK----CRELKSSALTSV 85
           +A  LRT+ K  + PS  P D A TLGT +    R  T  T+ +        +  A T  
Sbjct: 141 QATTLRTKPKPSV-PSHNPGDQATTLGTNKNPRDRAKTLGTKPQPWGPSHNPQDQAKTLG 199

Query: 84  TRPEKLMMSDAPGGLQEPA*PSR 16
           T+P+    S  P   Q+P+ PS+
Sbjct: 200 TKPQPWGPSHNPRDQQKPSGPSQ 222


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,954,767
Number of Sequences: 59808
Number of extensions: 290446
Number of successful extensions: 878
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 790
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 872
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1300738331
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)