Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0854
         (558 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor p...    25   0.52 
AY395073-1|AAQ96729.1|  203|Apis mellifera GABA neurotransmitter...    21   6.4  
DQ435325-1|ABD92640.1|  160|Apis mellifera OBP7 protein.               21   8.4  

>AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor
           protein.
          Length = 587

 Score = 25.0 bits (52), Expect = 0.52
 Identities = 17/54 (31%), Positives = 24/54 (44%), Gaps = 2/54 (3%)
 Frame = -1

Query: 294 GSGSLSNDVLKG--KSPEAKDLRTRLKMRISPSAEPTDAETLGTARTKLSRVPT 139
           G GS+ N    G  +SPE+    +  + +I  S      ETL T    L R P+
Sbjct: 310 GRGSVHNGSNNGSPRSPESNSRCSVKREKIKISVSYPSTETLNTKCNTLERTPS 363


>AY395073-1|AAQ96729.1|  203|Apis mellifera GABA neurotransmitter
           transporter-1A protein.
          Length = 203

 Score = 21.4 bits (43), Expect = 6.4
 Identities = 6/6 (100%), Positives = 6/6 (100%)
 Frame = +3

Query: 333 SCNNYW 350
           SCNNYW
Sbjct: 100 SCNNYW 105


>DQ435325-1|ABD92640.1|  160|Apis mellifera OBP7 protein.
          Length = 160

 Score = 21.0 bits (42), Expect = 8.4
 Identities = 6/15 (40%), Positives = 11/15 (73%)
 Frame = +2

Query: 512 NYSNDTCESKINYVL 556
           N S D CE+ +N+++
Sbjct: 122 NKSTDKCENGLNFII 136


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 131,374
Number of Sequences: 438
Number of extensions: 2269
Number of successful extensions: 4
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 16072521
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)