Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= mg--0854
(558 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g56340.1 68414.m06476 calreticulin 1 (CRT1) identical to calr... 32 0.23
At2g30580.1 68415.m03726 zinc finger (C3HC4-type RING finger) fa... 29 1.6
At3g13410.1 68416.m01686 expressed protein 29 2.1
At5g07880.1 68418.m00908 SNAP25 homologous protein, putative / s... 29 2.8
At5g12430.1 68418.m01461 DNAJ heat shock N-terminal domain-conta... 28 3.7
At3g30810.1 68416.m03942 hypothetical protein 28 3.7
At2g39380.1 68415.m04833 exocyst subunit EXO70 family protein co... 28 3.7
At1g48120.1 68414.m05370 calcineurin-like phosphoesterase family... 28 3.7
At1g36730.1 68414.m04569 eukaryotic translation initiation facto... 28 3.7
At1g09210.1 68414.m01028 calreticulin 2 (CRT2) identical to SP|Q... 28 3.7
At4g39190.1 68417.m05549 expressed protein ; expression support... 28 4.9
At2g43810.1 68415.m05446 small nuclear ribonucleoprotein F, puta... 28 4.9
At3g24340.1 68416.m03056 SNF2 domain-containing protein / helica... 27 6.4
At1g35420.1 68414.m04394 dienelactone hydrolase family protein l... 27 6.4
At5g57940.3 68418.m07250 cyclic nucleotide-regulated ion channel... 27 8.5
At5g57940.2 68418.m07249 cyclic nucleotide-regulated ion channel... 27 8.5
At5g57940.1 68418.m07248 cyclic nucleotide-regulated ion channel... 27 8.5
>At1g56340.1 68414.m06476 calreticulin 1 (CRT1) identical to
calreticulin (crt1) GI:2052379 [Arabidopsis thaliana]
Length = 425
Score = 32.3 bits (70), Expect = 0.23
Identities = 16/39 (41%), Positives = 22/39 (56%)
Frame = +1
Query: 211 NPHFQPRPEVFRFRRLALENVVAEATASVSLADNIIVSD 327
NP F+ PE++ F +L V S SL DN++VSD
Sbjct: 300 NPEFKDDPELYVFPKLKYVGVELWQVKSGSLFDNVLVSD 338
>At2g30580.1 68415.m03726 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile: PF00097 zinc
finger, C3HC4 type (RING finger)
Length = 420
Score = 29.5 bits (63), Expect = 1.6
Identities = 15/49 (30%), Positives = 29/49 (59%), Gaps = 2/49 (4%)
Frame = -1
Query: 288 GSLSNDVLKGKSPEAKDLRTRLKMR--ISPSAEPTDAETLGTARTKLSR 148
G+ S++ ++G + KD + + K+ IS + +PT +ET RT+ +R
Sbjct: 232 GNASHNDVQGSKTKTKDHKRKCKLEEEISNNGDPTTSETATLKRTRRTR 280
>At3g13410.1 68416.m01686 expressed protein
Length = 321
Score = 29.1 bits (62), Expect = 2.1
Identities = 14/44 (31%), Positives = 22/44 (50%)
Frame = -1
Query: 405 GWSNFASEEIDLEVRFDIANSYCSSDVTDNDVVCEGDGSGSLSN 274
GWSNF E LE D+A + ++ +DV + + +L N
Sbjct: 70 GWSNFLCSEKKLEQPVDVALVFIGRELLSSDVSSKRNSDPALVN 113
>At5g07880.1 68418.m00908 SNAP25 homologous protein, putative /
synaptosomal-associated protein SNAP25-like, putative
(SNAP29) identical to Swiss-Prot:Q9SD96 SNAP25
homologous protein SNAP29
(AtSNAP29)(Synaptosomal-associated protein SNAP25-like
2) [Arabidopsis thaliana]; contains Pfam profile:
PF05739 SNARE domain
Length = 251
Score = 28.7 bits (61), Expect = 2.8
Identities = 16/36 (44%), Positives = 25/36 (69%), Gaps = 3/36 (8%)
Frame = -1
Query: 291 SGSLSNDVL-KGKSPEAK--DLRTRLKMRISPSAEP 193
S S++ V+ KG SP+ K DL+TR K+ ++PS +P
Sbjct: 137 SRSITGPVITKGDSPKRKVIDLKTREKLGLNPSLKP 172
>At5g12430.1 68418.m01461 DNAJ heat shock N-terminal
domain-containing protein similarity to
TETRATRICOPEPTIDE REPEAT PROTEIN 2 , human,
SWISSPROT:TTC2_HUMAN; contains Pfam profiles PF00226:
DnaJ domain, PF00515: TPR Domain
Length = 1165
Score = 28.3 bits (60), Expect = 3.7
Identities = 17/49 (34%), Positives = 23/49 (46%)
Frame = +2
Query: 2 ADPLRRDGYAGSWSPPGASDIINFSGRVTDVKADDFSSLHLRRVSYVGT 148
+D L R GS + G +F G V + K DF+S S+VGT
Sbjct: 224 SDDLSRKLSVGSMTTDGNHSGDSFQGSVNEKKVHDFNSSCPMNYSFVGT 272
>At3g30810.1 68416.m03942 hypothetical protein
Length = 791
Score = 28.3 bits (60), Expect = 3.7
Identities = 13/28 (46%), Positives = 19/28 (67%), Gaps = 3/28 (10%)
Frame = -2
Query: 527 YRSSNLRN---LLMTSWATYSRTRLTSA 453
YR +N R+ L T+WAT+SR R+ +A
Sbjct: 178 YRDTNWRSKYFLFRTNWATFSRDRIVAA 205
>At2g39380.1 68415.m04833 exocyst subunit EXO70 family protein
contains Pfam domain PF03081: Exo70 exocyst complex
subunit;
Length = 637
Score = 28.3 bits (60), Expect = 3.7
Identities = 13/31 (41%), Positives = 18/31 (58%)
Frame = -2
Query: 542 FLIHKYRSSNLRNLLMTSWATYSRTRLTSAA 450
F++ RS++LRNLL W T +L S A
Sbjct: 470 FVVDTVRSTHLRNLLGDDWLTKHEAKLRSYA 500
>At1g48120.1 68414.m05370 calcineurin-like phosphoesterase family
protein contains Pfam profile: PF00149 calcineurin-like
phosphoesterase
Length = 1338
Score = 28.3 bits (60), Expect = 3.7
Identities = 14/60 (23%), Positives = 26/60 (43%), Gaps = 1/60 (1%)
Frame = -1
Query: 411 VDGWSNFASEEIDLEVRFDIANSYCSSDVTDNDVV-CEGDGSGSLSNDVLKGKSPEAKDL 235
+D S ++LE+ +D +++T ND C DG+ ++ D + P L
Sbjct: 1148 IDDCSTTGDAAVELEITYDEKLDRVVTEITGNDAAECMTDGNRDIATDGAENLEPSTSKL 1207
>At1g36730.1 68414.m04569 eukaryotic translation initiation factor
5, putative / eIF-5, putative similar to SP|P55876
Eukaryotic translation initiation factor 5 (eIF-5) {Zea
mays}; contains Pfam profiles PF02020:
eIF4-gamma/eIF5/eIF2-epsilon, PF01873: Domain found in
IF2B/IF5
Length = 439
Score = 28.3 bits (60), Expect = 3.7
Identities = 18/47 (38%), Positives = 22/47 (46%)
Frame = -1
Query: 390 ASEEIDLEVRFDIANSYCSSDVTDNDVVCEGDGSGSLSNDVLKGKSP 250
AS E EV I Y D+ D DV+ E G S+ VLK +P
Sbjct: 379 ASAEAAKEVALVIKGLY-DEDILDEDVIVEWYNKGVKSSPVLKNVTP 424
>At1g09210.1 68414.m01028 calreticulin 2 (CRT2) identical to
SP|Q38858 Calreticulin 2 precursor {Arabidopsis
thaliana}
Length = 424
Score = 28.3 bits (60), Expect = 3.7
Identities = 13/39 (33%), Positives = 21/39 (53%)
Frame = +1
Query: 211 NPHFQPRPEVFRFRRLALENVVAEATASVSLADNIIVSD 327
NP F+ PE++ F +L + S SL DN+++ D
Sbjct: 300 NPDFKDDPELYVFPKLKYVGLELWQVKSGSLFDNVLICD 338
>At4g39190.1 68417.m05549 expressed protein ; expression supported
by MPSS
Length = 277
Score = 27.9 bits (59), Expect = 4.9
Identities = 20/92 (21%), Positives = 40/92 (43%), Gaps = 1/92 (1%)
Frame = -1
Query: 339 CSSDVTDNDVVCEGDGSGSLSNDVLK-GKSPEAKDLRTRLKMRISPSAEPTDAETLGTAR 163
C S+ D V E G S D ++ G+ + + + + + E + +++ +R
Sbjct: 98 CKSNDLYEDFVLESSRRGGFSQDEMRSGEKQSEAENEAKQSITENKAKENEEKQSITESR 157
Query: 162 TKLSRVPT*LTRRKCRELKSSALTSVTRPEKL 67
K S +T +K + + S ++PEKL
Sbjct: 158 VKKS-----VTEKKTKRIISEKKVKQSKPEKL 184
>At2g43810.1 68415.m05446 small nuclear ribonucleoprotein F,
putative / U6 snRNA-associated Sm-like protein, putative
/ Sm protein F, putative similar to SWISS-PROT:Q9Y4Y8 U6
snRNA-associated Sm-like protein LSm6 [Mus musculus]
Length = 91
Score = 27.9 bits (59), Expect = 4.9
Identities = 14/46 (30%), Positives = 25/46 (54%)
Frame = -1
Query: 411 VDGWSNFASEEIDLEVRFDIANSYCSSDVTDNDVVCEGDGSGSLSN 274
+DG+ N A E+ + V + N+Y + V N+V+ G+LS+
Sbjct: 44 LDGYMNIAMEQTEEYVNGQLKNTYGDAFVRGNNVLYISTTKGTLSD 89
>At3g24340.1 68416.m03056 SNF2 domain-containing protein / helicase
domain-containing protein similar to SP|P41410 DNA
repair protein rhp54 (RAD54 homolog)
{Schizosaccharomyces pombe}; contains PFam profiles
PF00271: Helicase conserved C-terminal domain, PF00176:
SNF2 family N-terminal domain
Length = 1132
Score = 27.5 bits (58), Expect = 6.4
Identities = 18/57 (31%), Positives = 26/57 (45%), Gaps = 2/57 (3%)
Frame = -1
Query: 405 GWSNFASEEIDLEVRFDIANSYCSSDV--TDNDVVCEGDGSGSLSNDVLKGKSPEAK 241
G S+ + D + + S SSDV +D+D VC D G +D K+P K
Sbjct: 269 GESDMDEDANDSDSSDYVGESSDSSDVESSDSDFVCSEDEEGGTRDDATCEKNPSEK 325
>At1g35420.1 68414.m04394 dienelactone hydrolase family protein low
similarity to dienelactone hydrolase [Rhodococcus
opacus] GI:23094407; contains Pfam profile PF01738:
Dienelactone hydrolase family
Length = 310
Score = 27.5 bits (58), Expect = 6.4
Identities = 14/31 (45%), Positives = 18/31 (58%)
Frame = +2
Query: 77 GRVTDVKADDFSSLHLRRVSYVGTRLNLVLA 169
GRV DV A D S VS+ GTR++ +A
Sbjct: 205 GRVVDVLATDESGYFSTGVSFYGTRIDSAVA 235
>At5g57940.3 68418.m07250 cyclic nucleotide-regulated ion channel /
cyclic nucleotide-gated channel (CNGC5) identical to
cyclic nucleotide and calmodulin-regulated ion channel
(cngc5) GI:4581205 from [Arabidopsis thaliana]
Length = 710
Score = 27.1 bits (57), Expect = 8.5
Identities = 21/64 (32%), Positives = 28/64 (43%)
Frame = -2
Query: 473 RTRLTSAA*SVR*TGIFSRKLLTAGPTSRPKRLIWRLDLTSPIVIAAPMSLTMMLSARET 294
R RL S +G F+R LL G + L W LD S + + P S + + E
Sbjct: 533 RGRLESVTTDGGRSGFFNRSLLKEGEFCGEELLTWALDPKSGVNL--PSSTRTVKALTEV 590
Query: 293 EAVA 282
EA A
Sbjct: 591 EAFA 594
>At5g57940.2 68418.m07249 cyclic nucleotide-regulated ion channel /
cyclic nucleotide-gated channel (CNGC5) identical to
cyclic nucleotide and calmodulin-regulated ion channel
(cngc5) GI:4581205 from [Arabidopsis thaliana]
Length = 717
Score = 27.1 bits (57), Expect = 8.5
Identities = 21/64 (32%), Positives = 28/64 (43%)
Frame = -2
Query: 473 RTRLTSAA*SVR*TGIFSRKLLTAGPTSRPKRLIWRLDLTSPIVIAAPMSLTMMLSARET 294
R RL S +G F+R LL G + L W LD S + + P S + + E
Sbjct: 540 RGRLESVTTDGGRSGFFNRSLLKEGEFCGEELLTWALDPKSGVNL--PSSTRTVKALTEV 597
Query: 293 EAVA 282
EA A
Sbjct: 598 EAFA 601
>At5g57940.1 68418.m07248 cyclic nucleotide-regulated ion channel /
cyclic nucleotide-gated channel (CNGC5) identical to
cyclic nucleotide and calmodulin-regulated ion channel
(cngc5) GI:4581205 from [Arabidopsis thaliana]
Length = 717
Score = 27.1 bits (57), Expect = 8.5
Identities = 21/64 (32%), Positives = 28/64 (43%)
Frame = -2
Query: 473 RTRLTSAA*SVR*TGIFSRKLLTAGPTSRPKRLIWRLDLTSPIVIAAPMSLTMMLSARET 294
R RL S +G F+R LL G + L W LD S + + P S + + E
Sbjct: 540 RGRLESVTTDGGRSGFFNRSLLKEGEFCGEELLTWALDPKSGVNL--PSSTRTVKALTEV 597
Query: 293 EAVA 282
EA A
Sbjct: 598 EAFA 601
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,448,303
Number of Sequences: 28952
Number of extensions: 191734
Number of successful extensions: 673
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 659
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 673
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1062855648
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -