Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= mg--0852
(601 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe... 28 1.2
SPCC285.16c |msh6||MutS protein homolog|Schizosaccharomyces pomb... 27 2.1
SPCC1223.02 |nmt1|thi3|no message in thiamine Nmt1|Schizosacchar... 26 3.7
SPAC16C9.02c |||S-methyl-5-thioadenosine phosphorylase|Schizosac... 26 4.8
SPCC550.11 |||karyopherin|Schizosaccharomyces pombe|chr 3|||Manual 26 4.8
SPCC1235.10c |sec6||exocyst complex subunit Sec6|Schizosaccharom... 26 4.8
SPBC24C6.04 |||delta-1-pyrroline-5-carboxylate dehydrogenase|Sch... 25 8.5
SPAC30.04c |abc4||glutathione S-conjugate-exporting ATPase Abc4|... 25 8.5
SPAC1327.01c ||SPAC1783.09c, SPAC18G6.16c|transcription factor, ... 25 8.5
SPBC660.11 |tcg1|mug187|single-stranded telomeric binding protei... 25 8.5
>SPBC660.06 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 273
Score = 27.9 bits (59), Expect = 1.2
Identities = 21/65 (32%), Positives = 29/65 (44%), Gaps = 3/65 (4%)
Frame = -1
Query: 379 NIANSKNGTELPNVDAR*QS*ADSGDQ---TNIFDDKASTTGYSHSLPKMVA*PLTATAE 209
N + N PN A + AD D+ + + TTG S+S P VA P+ A
Sbjct: 106 NAPANTNAAYYPNAAATTTTNADGSDKGLFSGLTSSNGYTTGNSYSRPSYVA-PVAAGLG 164
Query: 208 ALSLG 194
L+LG
Sbjct: 165 GLALG 169
>SPCC285.16c |msh6||MutS protein homolog|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1254
Score = 27.1 bits (57), Expect = 2.1
Identities = 12/26 (46%), Positives = 15/26 (57%)
Frame = +2
Query: 413 DVSEKLNDALNNRLPELLETYNEQIR 490
D S+K L N L LLE Y +Q+R
Sbjct: 841 DTSQKYQSELKNELYALLEQYKKQLR 866
>SPCC1223.02 |nmt1|thi3|no message in thiamine
Nmt1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 346
Score = 26.2 bits (55), Expect = 3.7
Identities = 15/51 (29%), Positives = 24/51 (47%), Gaps = 3/51 (5%)
Frame = -1
Query: 514 RGNTLNDLPDLL---VVSFEEFGKSVVQSVIQLFGYVVAEENNFESGLNIA 371
+GN +ND D+ + EFGK + + FG ++ G+NIA
Sbjct: 95 KGNGINDFKDIKGKRIGYVGEFGKIQLDDLCSKFGLSPSDYTAIRCGMNIA 145
>SPAC16C9.02c |||S-methyl-5-thioadenosine
phosphorylase|Schizosaccharomyces pombe|chr 1|||Manual
Length = 307
Score = 25.8 bits (54), Expect = 4.8
Identities = 12/38 (31%), Positives = 19/38 (50%)
Frame = +3
Query: 447 TDFPNSSKLTTSRSGRSLSVFPLHHQQYFVNSRLNVYR 560
++ N SKL T R G L+V + + + N+YR
Sbjct: 152 SNLKNGSKLHTKRKGDDLTVVCMEGPAFSTRAESNLYR 189
>SPCC550.11 |||karyopherin|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1029
Score = 25.8 bits (54), Expect = 4.8
Identities = 9/18 (50%), Positives = 13/18 (72%)
Frame = -1
Query: 580 HKLSKFRRYTLRRLFTKY 527
HK K+ Y+L R+FT+Y
Sbjct: 254 HKCKKWAYYSLNRIFTRY 271
>SPCC1235.10c |sec6||exocyst complex subunit
Sec6|Schizosaccharomyces pombe|chr 3|||Manual
Length = 730
Score = 25.8 bits (54), Expect = 4.8
Identities = 17/55 (30%), Positives = 33/55 (60%), Gaps = 5/55 (9%)
Frame = -1
Query: 508 NTLNDLPDLLVVSF-----EEFGKSVVQSVIQLFGYVVAEENNFESGLNIANSKN 359
NTL+D D LV++F + +++++Q+F V AEE++ E +I ++K+
Sbjct: 163 NTLSDNFDRLVLNFCRNIFQLVKSGHIKTIVQIFKIVEAEESSDEVLKSIRDAKS 217
>SPBC24C6.04 |||delta-1-pyrroline-5-carboxylate
dehydrogenase|Schizosaccharomyces pombe|chr 2|||Manual
Length = 548
Score = 25.0 bits (52), Expect = 8.5
Identities = 14/46 (30%), Positives = 23/46 (50%), Gaps = 1/46 (2%)
Frame = +2
Query: 161 ETNYIQHRPCPPQTQRLCCRRQRSG-HHLWQGMAVASSGSLVVEDI 295
ETN I + CP + +++ R R+G H+ + A G V E +
Sbjct: 55 ETNTIGEQRCPFEHKKVVARYHRAGAKHVEDAIEAALRGKKVWESL 100
>SPAC30.04c |abc4||glutathione S-conjugate-exporting ATPase
Abc4|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1469
Score = 25.0 bits (52), Expect = 8.5
Identities = 9/27 (33%), Positives = 18/27 (66%)
Frame = +3
Query: 495 SLSVFPLHHQQYFVNSRLNVYRLNLLS 575
++S+FP H+ Q ++N + Y+ +L S
Sbjct: 33 AISIFPTHYDQPYLNEAPSWYKYSLES 59
>SPAC1327.01c ||SPAC1783.09c, SPAC18G6.16c|transcription factor,
zf-fungal binuclear cluster type |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 977
Score = 25.0 bits (52), Expect = 8.5
Identities = 15/28 (53%), Positives = 15/28 (53%)
Frame = -2
Query: 441 KASFSFSDTSLPKRTTLRADSTLPTVRT 358
K SFS TSLP TT A S L T T
Sbjct: 341 KLDSSFSPTSLPTFTTNSASSGLSTSYT 368
>SPBC660.11 |tcg1|mug187|single-stranded telomeric binding protein
Tgc1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 348
Score = 25.0 bits (52), Expect = 8.5
Identities = 12/32 (37%), Positives = 20/32 (62%)
Frame = -2
Query: 369 TVRTALSSLTLMLGSNRKLTVETRRISSTTRL 274
T ++ + SL +G+ RK+T+ RR+ TRL
Sbjct: 55 TKKSEIRSLFETVGTVRKVTIPFRRVRRGTRL 86
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,237,379
Number of Sequences: 5004
Number of extensions: 41246
Number of successful extensions: 160
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 153
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 160
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 262236260
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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