Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0852
         (601 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_02_0058 - 5316112-5316418,5316497-5316705,5316773-5316859,531...    35   0.057
06_01_0441 + 3130906-3131424,3131847-3132269                           31   0.70 
09_04_0461 + 17781413-17781474,17781576-17781629,17781729-177818...    30   1.2  
10_08_0479 - 18199310-18199348,18199938-18200255                       29   2.8  
07_03_0236 - 15571010-15571117,15571413-15571444,15572014-15572209     28   6.6  
07_03_0056 - 12863599-12863715,12864107-12864235,12864322-128644...    28   6.6  
02_01_0765 - 5694535-5694644,5695039-5696550,5697229-5697390,569...    28   6.6  
03_01_0604 + 4449416-4449766,4450150-4450374                           27   8.7  
01_06_1771 + 39787895-39788223,39788419-39788518,39788640-39788774     27   8.7  

>03_02_0058 -
           5316112-5316418,5316497-5316705,5316773-5316859,
           5316945-5317055,5317536-5317643,5319082-5319149,
           5319269-5319320
          Length = 313

 Score = 34.7 bits (76), Expect = 0.057
 Identities = 17/69 (24%), Positives = 33/69 (47%)
 Frame = +3

Query: 12  ERGLDPIYVEKAEHYTFPISDIFSASGTVAELALEGISNVVVNDVTFNLLRPTTFSIDLA 191
           +RGL    V+K   YT  +S ++    T+ ++ ++  SN+      F++L  T     + 
Sbjct: 75  DRGLTSTAVKKGGLYTLDVSSVYKYKSTLVDVKVDTESNISTTLTVFDVLPSTKLVTSVK 134

Query: 192 LPKLSASAV 218
           LP  ++  V
Sbjct: 135 LPDYNSGKV 143


>06_01_0441 + 3130906-3131424,3131847-3132269
          Length = 313

 Score = 31.1 bits (67), Expect = 0.70
 Identities = 13/39 (33%), Positives = 19/39 (48%)
 Frame = -3

Query: 278 GFHYWLQPFPAKDGGLTVDGDSRGAEFGEGKVDAECSWS 162
           G H WL+   A+   L  D D RG   G+G+     +W+
Sbjct: 7   GHHVWLRS-RAQGTYLRADDDGRGVSMGQGRASVHAAWT 44


>09_04_0461 +
           17781413-17781474,17781576-17781629,17781729-17781839,
           17781921-17781991,17782256-17782449,17783019-17783096
          Length = 189

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 19/45 (42%), Positives = 26/45 (57%), Gaps = 2/45 (4%)
 Frame = +2

Query: 374 NVESALKVVLFGNDVSEKLNDALNNRLPE--LLETYNEQIREIVE 502
           NVE+AL+VV    +V+EKL   + N LPE   L    E++  I E
Sbjct: 105 NVETALEVVEHAAEVTEKLAANVANALPENGTLHKLAEEVEYIAE 149


>10_08_0479 - 18199310-18199348,18199938-18200255
          Length = 118

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 15/39 (38%), Positives = 19/39 (48%)
 Frame = +2

Query: 161 ETNYIQHRPCPPQTQRLCCRRQRSGHHLWQGMAVASSGS 277
           ET + QH   PP+ Q  C  R+R  HH    +    SGS
Sbjct: 27  ETRHAQHHEKPPRHQSACLSRRRL-HHAAHVVRTGVSGS 64


>07_03_0236 - 15571010-15571117,15571413-15571444,15572014-15572209
          Length = 111

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 17/55 (30%), Positives = 27/55 (49%)
 Frame = +3

Query: 186 LALPKLSASAVAVNGQATIFGREWL*PVVEALSSKIFVWSPLSAYDCYLASTLGS 350
           +A+P +  +A++    AT        PVV+ LSS     SPLS + C +    G+
Sbjct: 1   MAMPSVGIAALSSTSIATPPRPRRQGPVVDVLSSAGITTSPLSRWSCLVPPLQGA 55


>07_03_0056 -
           12863599-12863715,12864107-12864235,12864322-12864408,
           12864657-12864848,12864930-12865106,12865174-12865420,
           12865510-12865619,12865751-12865851,12865937-12866000,
           12866433-12866522,12866621-12866719,12866817-12866897,
           12867197-12867535
          Length = 610

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 21/72 (29%), Positives = 31/72 (43%), Gaps = 1/72 (1%)
 Frame = -3

Query: 323 IVS*QWRPDEYLRRQGFHYWLQPFPAKDGGLTVDGDSRGAE-FGEGKVDAECSWSQKVES 147
           IV  ++ P   ++ QG  Y + P  +  GGL VD    G   F  G  + EC     V+ 
Sbjct: 480 IVPSRFEPCGLIQLQGMRYGVVPICSSTGGL-VDTVKEGVTGFHMGLFNVECETVDPVDV 538

Query: 146 DVIDDNVADALE 111
             +   V  AL+
Sbjct: 539 TAVASTVKRALK 550


>02_01_0765 -
           5694535-5694644,5695039-5696550,5697229-5697390,
           5698015-5698057
          Length = 608

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 16/56 (28%), Positives = 28/56 (50%), Gaps = 2/56 (3%)
 Frame = +3

Query: 3   GIQERGLDPIYVEKAEHYTFP--ISDIFSASGTVAELALEGISNVVVNDVTFNLLR 164
           G+  RG+D + V +   +  P  I +     G  + + +EG++ V VN+   NL R
Sbjct: 487 GVLGRGMDLLKVRQVILFDMPNSIDEYVHQVGRASRMGVEGMAIVFVNEEDRNLFR 542


>03_01_0604 + 4449416-4449766,4450150-4450374
          Length = 191

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 20/47 (42%), Positives = 23/47 (48%), Gaps = 3/47 (6%)
 Frame = -3

Query: 305 RPDEY-LRRQGF-HYWLQPFPA-KDGGLTVDGDSRGAEFGEGKVDAE 174
           RP  + LRR+G    WL   P  KD      GD  G EFG   V+AE
Sbjct: 10  RPSRWRLRRRGAARRWLDDEPEEKDTSCMTTGDG-GGEFGRSVVEAE 55


>01_06_1771 + 39787895-39788223,39788419-39788518,39788640-39788774
          Length = 187

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 14/39 (35%), Positives = 20/39 (51%)
 Frame = +3

Query: 183 DLALPKLSASAVAVNGQATIFGREWL*PVVEALSSKIFV 299
           D A     A AVAV GQ T   ++   P+V++   K+ V
Sbjct: 65  DTATVGAEAEAVAVTGQVTEVNKDTFWPIVKSAGPKVVV 103


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,554,951
Number of Sequences: 37544
Number of extensions: 279148
Number of successful extensions: 972
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 946
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 972
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1435654836
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)