Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= mg--0852
(601 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_59502| Best HMM Match : Arg_repressor (HMM E-Value=1.2) 33 0.23
SB_32671| Best HMM Match : SerH (HMM E-Value=0.4) 32 0.31
SB_59003| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.2
SB_34413| Best HMM Match : Myosin_head (HMM E-Value=0) 29 3.8
SB_47897| Best HMM Match : DUF156 (HMM E-Value=2.9) 29 3.8
SB_12798| Best HMM Match : Ammonium_transp (HMM E-Value=0) 28 5.0
SB_39796| Best HMM Match : VWA (HMM E-Value=0) 28 5.0
SB_21704| Best HMM Match : Ammonium_transp (HMM E-Value=0) 28 5.0
SB_28533| Best HMM Match : DNA_pol_B_2 (HMM E-Value=0.0065) 28 6.6
SB_22942| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.6
SB_15824| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.6
SB_57914| Best HMM Match : Ion_trans_2 (HMM E-Value=7.5e-07) 28 6.6
SB_51854| Best HMM Match : 7tm_1 (HMM E-Value=1.3e-05) 27 8.8
SB_41234| Best HMM Match : CASP_C (HMM E-Value=0.79) 27 8.8
SB_7573| Best HMM Match : Nucleoporin (HMM E-Value=0.21) 27 8.8
SB_38682| Best HMM Match : DAGAT (HMM E-Value=1.4e-16) 27 8.8
SB_32754| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.8
SB_31640| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.8
>SB_59502| Best HMM Match : Arg_repressor (HMM E-Value=1.2)
Length = 277
Score = 32.7 bits (71), Expect = 0.23
Identities = 15/53 (28%), Positives = 28/53 (52%), Gaps = 1/53 (1%)
Frame = +2
Query: 347 ELSAVLTVGNVESALKVVLFGNDVSEKLNDALNNRLPELLET-YNEQIREIVE 502
E ++ ++ LK +L ND+ +KL+DAL N E + + + ++E E
Sbjct: 48 EFKKLIWKDGIQEKLKEILVSNDMQQKLSDALKNNSTETMTAQFTQALKEACE 100
>SB_32671| Best HMM Match : SerH (HMM E-Value=0.4)
Length = 406
Score = 32.3 bits (70), Expect = 0.31
Identities = 19/54 (35%), Positives = 29/54 (53%)
Frame = -2
Query: 435 SFSFSDTSLPKRTTLRADSTLPTVRTALSSLTLMLGSNRKLTVETRRISSTTRL 274
+F+ S LP+ ++L+A S PT + S ++L SN K + T STT L
Sbjct: 116 AFTTSLMFLPRTSSLKASSNTPTALSTTSLMSLPSTSNLKASSNTPTALSTTSL 169
Score = 29.1 bits (62), Expect = 2.9
Identities = 17/47 (36%), Positives = 25/47 (53%)
Frame = -2
Query: 414 SLPKRTTLRADSTLPTVRTALSSLTLMLGSNRKLTVETRRISSTTRL 274
SLP ++L A S PT +A S ++L S+ K + + STT L
Sbjct: 195 SLPSTSSLEASSNTPTALSATSLMSLPSTSSLKASSNSPSALSTTSL 241
>SB_59003| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 605
Score = 30.3 bits (65), Expect = 1.2
Identities = 17/37 (45%), Positives = 21/37 (56%)
Frame = +3
Query: 402 SSATTYPKS*MTL*TTDFPNSSKLTTSRSGRSLSVFP 512
SSATT P+S + TT SS + T RSG S + P
Sbjct: 237 SSATTTPRSDSSAMTTPGSGSSAMATPRSGSSATTTP 273
Score = 29.5 bits (63), Expect = 2.2
Identities = 15/40 (37%), Positives = 24/40 (60%)
Frame = +3
Query: 402 SSATTYPKS*MTL*TTDFPNSSKLTTSRSGRSLSVFPLHH 521
SSA P+S + TT +SS +TT++SG S + P+ +
Sbjct: 257 SSAMATPRSGSSATTTPRSDSSAITTTKSGSSSQITPIRN 296
>SB_34413| Best HMM Match : Myosin_head (HMM E-Value=0)
Length = 650
Score = 28.7 bits (61), Expect = 3.8
Identities = 13/36 (36%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
Frame = -1
Query: 466 EEFGKSVVQSVIQLFGYVVAEENNFES-GLNIANSK 362
+E GK V V+ ++G+ + E N+FE +N N K
Sbjct: 359 KEHGKCTVIGVLDIYGFEIFETNSFEQLCINYCNEK 394
>SB_47897| Best HMM Match : DUF156 (HMM E-Value=2.9)
Length = 430
Score = 28.7 bits (61), Expect = 3.8
Identities = 17/69 (24%), Positives = 37/69 (53%), Gaps = 3/69 (4%)
Frame = -3
Query: 308 WRPDEYLRRQGFHYWLQPFPAKDGGLTVDGD--SRGAEFGEG-KVDAECSWSQKVESDVI 138
+ PD+ LR + W QP AK T RG + G ++A+ +++ +E+ +I
Sbjct: 253 YHPDDTLRARRPPAWRQPVHAKSAWRTGKRPFLYRGGRWAGGPALEAQAEFTKLLENAII 312
Query: 137 DDNVADALE 111
++++A +++
Sbjct: 313 ENDIAQSVQ 321
>SB_12798| Best HMM Match : Ammonium_transp (HMM E-Value=0)
Length = 492
Score = 28.3 bits (60), Expect = 5.0
Identities = 21/62 (33%), Positives = 28/62 (45%), Gaps = 2/62 (3%)
Frame = -3
Query: 221 GDSRGAEFG--EGKVDAECSWSQKVESDVIDDNVADALESQFGYCARCAEDVRNWESVMF 48
G + G+ FG GK S+ ++D V L G A CA VR WES++
Sbjct: 230 GFNCGSTFGISGGKWKLASSYIAHANKLMVDVFVTGILGGLVGITAICAV-VRQWESLLI 288
Query: 47 GF 42
GF
Sbjct: 289 GF 290
>SB_39796| Best HMM Match : VWA (HMM E-Value=0)
Length = 2119
Score = 28.3 bits (60), Expect = 5.0
Identities = 23/80 (28%), Positives = 45/80 (56%), Gaps = 3/80 (3%)
Frame = +2
Query: 269 SGSLVVEDIRLVST---VSLRLLPSINVRELSAVLTVGNVESALKVVLFGNDVSEKLNDA 439
+G + ++LV T +++L+ + N + V+T GN +S +K+V+ GND + KL
Sbjct: 854 TGKRIDSTVKLVVTGNDSTVKLVVTGNDSTVKLVVT-GN-DSTVKIVVTGNDSTVKLVVT 911
Query: 440 LNNRLPELLETYNEQIREIV 499
N+ +L+ T N+ ++V
Sbjct: 912 GNDSTVKLVVTGNDSTVKLV 931
>SB_21704| Best HMM Match : Ammonium_transp (HMM E-Value=0)
Length = 492
Score = 28.3 bits (60), Expect = 5.0
Identities = 21/62 (33%), Positives = 28/62 (45%), Gaps = 2/62 (3%)
Frame = -3
Query: 221 GDSRGAEFG--EGKVDAECSWSQKVESDVIDDNVADALESQFGYCARCAEDVRNWESVMF 48
G + G+ FG GK S+ ++D V L G A CA VR WES++
Sbjct: 230 GFNCGSTFGISGGKWKLASSYIAHANKLMVDVFVTGILGGLVGITAICAV-VRQWESLLI 288
Query: 47 GF 42
GF
Sbjct: 289 GF 290
>SB_28533| Best HMM Match : DNA_pol_B_2 (HMM E-Value=0.0065)
Length = 681
Score = 27.9 bits (59), Expect = 6.6
Identities = 14/46 (30%), Positives = 23/46 (50%)
Frame = +2
Query: 401 LFGNDVSEKLNDALNNRLPELLETYNEQIREIVERIXXXXXTIFCK 538
L N V K + + NR+ L T +Q R+++ + TIFC+
Sbjct: 562 LMNNSVFGKTMENIRNRVDIRLITNEKQARKLISKPNYKHRTIFCE 607
>SB_22942| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1092
Score = 27.9 bits (59), Expect = 6.6
Identities = 14/46 (30%), Positives = 22/46 (47%)
Frame = +2
Query: 401 LFGNDVSEKLNDALNNRLPELLETYNEQIREIVERIXXXXXTIFCK 538
L N V K + + NR+ L T Q R+++ + TIFC+
Sbjct: 822 LINNSVFGKTMENIRNRVDIRLVTNESQARKLISKPNYQHRTIFCE 867
>SB_15824| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1258
Score = 27.9 bits (59), Expect = 6.6
Identities = 14/46 (30%), Positives = 23/46 (50%)
Frame = +2
Query: 401 LFGNDVSEKLNDALNNRLPELLETYNEQIREIVERIXXXXXTIFCK 538
L N V K + + NR+ L T +Q R+++ + TIFC+
Sbjct: 1000 LMNNSVFGKTMENIRNRVDIRLITNEKQARKLISKPNYKHRTIFCE 1045
>SB_57914| Best HMM Match : Ion_trans_2 (HMM E-Value=7.5e-07)
Length = 564
Score = 27.9 bits (59), Expect = 6.6
Identities = 15/35 (42%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
Frame = -3
Query: 287 RRQGFHYW-LQPFPAKDGGLTVDGDSRGAEFGEGK 186
R +G H++ L PF DG L V G R +EF G+
Sbjct: 48 RLKGTHFYNLDPFVDADGLLRVGGPLRRSEFSYGE 82
>SB_51854| Best HMM Match : 7tm_1 (HMM E-Value=1.3e-05)
Length = 447
Score = 27.5 bits (58), Expect = 8.8
Identities = 15/35 (42%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
Frame = -3
Query: 287 RRQGFHYW-LQPFPAKDGGLTVDGDSRGAEFGEGK 186
R +G H++ L PF DG L V G R +EF G+
Sbjct: 148 RLKGTHFYNLDPFVDADGLLRVGGRLRRSEFSYGE 182
>SB_41234| Best HMM Match : CASP_C (HMM E-Value=0.79)
Length = 296
Score = 27.5 bits (58), Expect = 8.8
Identities = 11/24 (45%), Positives = 14/24 (58%)
Frame = -3
Query: 242 DGGLTVDGDSRGAEFGEGKVDAEC 171
DGG DGD G + G+G D +C
Sbjct: 234 DGGGDDDGDGDGVDDGDGDGDGDC 257
>SB_7573| Best HMM Match : Nucleoporin (HMM E-Value=0.21)
Length = 928
Score = 27.5 bits (58), Expect = 8.8
Identities = 18/67 (26%), Positives = 34/67 (50%)
Frame = +2
Query: 161 ETNYIQHRPCPPQTQRLCCRRQRSGHHLWQGMAVASSGSLVVEDIRLVSTVSLRLLPSIN 340
+ NY Q + PP T +LC + G++ +Q + +G ++E LVS+ + PS
Sbjct: 779 DDNY-QPQQHPPATTKLCHNKNIDGNYTYQPQRLEPTGDGILE---LVSSTRDKSPPSGT 834
Query: 341 VRELSAV 361
+ +S +
Sbjct: 835 FKGVSVI 841
>SB_38682| Best HMM Match : DAGAT (HMM E-Value=1.4e-16)
Length = 807
Score = 27.5 bits (58), Expect = 8.8
Identities = 14/39 (35%), Positives = 19/39 (48%), Gaps = 2/39 (5%)
Frame = -3
Query: 476 CKFRGVREVCCSKRHSAFRIRRCRREQL--*ERTQHCQQ 366
C+ + R+V RH F IRRC + R+Q C Q
Sbjct: 34 CRAKTARKVIPGTRHQLFAIRRCETNGVCFATRSQRCPQ 72
>SB_32754| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 5659
Score = 27.5 bits (58), Expect = 8.8
Identities = 20/55 (36%), Positives = 29/55 (52%), Gaps = 5/55 (9%)
Frame = -2
Query: 420 DTSLPKRTTLRADSTLPTVRT-----ALSSLTLMLGSNRKLTVETRRISSTTRLP 271
+T+LP TT+ ++STL +V T ++S+T M L ET S TT P
Sbjct: 1640 ETTLPPETTMASESTLASVTTMAPESTVASVTTM-APESTLAPETIIASETTVAP 1693
Score = 27.5 bits (58), Expect = 8.8
Identities = 16/50 (32%), Positives = 27/50 (54%)
Frame = -2
Query: 420 DTSLPKRTTLRADSTLPTVRTALSSLTLMLGSNRKLTVETRRISSTTRLP 271
+T+LP TT+ ++ST P + L+ T+ + S + ET + TT P
Sbjct: 1920 ETTLPPETTMASEST-PAPESTLAPETI-IASETTVAPETTMVPGTTLEP 1967
>SB_31640| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 3003
Score = 27.5 bits (58), Expect = 8.8
Identities = 13/42 (30%), Positives = 23/42 (54%), Gaps = 2/42 (4%)
Frame = -3
Query: 230 TVDGDSRGAEFGEGKVDAECSWSQKV--ESDVIDDNVADALE 111
++DGD G+E G + CS Q+ ES+ +D + +L+
Sbjct: 1237 SIDGDRGGSETGHRSTSSHCSDDQRAQEESEALDHDRLHSLQ 1278
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,640,604
Number of Sequences: 59808
Number of extensions: 315505
Number of successful extensions: 1158
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 1043
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1154
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1451595000
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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