Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0852
         (601 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U72355-1|AAC00056.1|  915|Homo sapiens Hsp27 ERE-TATA-binding pr...    31   3.1  
L43631-1|AAC18697.1|  864|Homo sapiens scaffold attachment facto...    31   3.1  
BC126219-1|AAI26220.1|  917|Homo sapiens scaffold attachment fac...    31   3.1  
AB208780-1|BAD92017.1|  772|Homo sapiens scaffold attachment fac...    31   3.1  
AY307930-1|AAQ73824.1|  340|Homo sapiens intestinal mucin MUC3A ...    30   7.1  

>U72355-1|AAC00056.1|  915|Homo sapiens Hsp27 ERE-TATA-binding
           protein protein.
          Length = 915

 Score = 31.1 bits (67), Expect = 3.1
 Identities = 15/41 (36%), Positives = 21/41 (51%)
 Frame = -3

Query: 197 GEGKVDAECSWSQKVESDVIDDNVADALESQFGYCARCAED 75
           G+G+ D E S     + D++D +V D  E   G  A C ED
Sbjct: 110 GDGQEDVETSLENLQDIDIMDISVLDEAEIDNGSVADCVED 150


>L43631-1|AAC18697.1|  864|Homo sapiens scaffold attachment factor B
           protein.
          Length = 864

 Score = 31.1 bits (67), Expect = 3.1
 Identities = 15/41 (36%), Positives = 21/41 (51%)
 Frame = -3

Query: 197 GEGKVDAECSWSQKVESDVIDDNVADALESQFGYCARCAED 75
           G+G+ D E S     + D++D +V D  E   G  A C ED
Sbjct: 59  GDGQEDVETSLENLQDIDIMDISVLDEAEIDNGSVADCVED 99


>BC126219-1|AAI26220.1|  917|Homo sapiens scaffold attachment factor
           B protein.
          Length = 917

 Score = 31.1 bits (67), Expect = 3.1
 Identities = 15/41 (36%), Positives = 21/41 (51%)
 Frame = -3

Query: 197 GEGKVDAECSWSQKVESDVIDDNVADALESQFGYCARCAED 75
           G+G+ D E S     + D++D +V D  E   G  A C ED
Sbjct: 110 GDGQEDVETSLENLQDIDIMDISVLDEAEIDNGSVADCVED 150


>AB208780-1|BAD92017.1|  772|Homo sapiens scaffold attachment factor
           B variant protein.
          Length = 772

 Score = 31.1 bits (67), Expect = 3.1
 Identities = 15/41 (36%), Positives = 21/41 (51%)
 Frame = -3

Query: 197 GEGKVDAECSWSQKVESDVIDDNVADALESQFGYCARCAED 75
           G+G+ D E S     + D++D +V D  E   G  A C ED
Sbjct: 130 GDGQEDVETSLENLQDIDIMDISVLDEAEIDNGSVADCVED 170


>AY307930-1|AAQ73824.1|  340|Homo sapiens intestinal mucin MUC3A
           precursor protein.
          Length = 340

 Score = 29.9 bits (64), Expect = 7.1
 Identities = 23/66 (34%), Positives = 34/66 (51%), Gaps = 3/66 (4%)
 Frame = -2

Query: 438 ASFSFSDTSLPKRTTLRADSTLPTVRTALSSLT-LMLGSNRKLTVE--TRRISSTTRLPL 268
           +S + S TS    T++   ++ PT    LSS T  +L S   L+ E  T  I++TT L  
Sbjct: 257 SSITSSITSTNTVTSMTTTASQPTATNTLSSPTRTILSSTPVLSTETITSGITNTTPLST 316

Query: 267 LATAIP 250
           L T +P
Sbjct: 317 LVTTLP 322


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 75,303,906
Number of Sequences: 237096
Number of extensions: 1432361
Number of successful extensions: 3358
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 3256
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3358
length of database: 76,859,062
effective HSP length: 87
effective length of database: 56,231,710
effective search space used: 6297951520
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)