Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= mg--0852
(601 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g71520.1 68414.m08267 AP2 domain-containing transcription fac... 30 1.0
At1g31540.1 68414.m03869 disease resistance protein (TIR-NBS-LRR... 30 1.3
At1g52340.1 68414.m05908 short-chain dehydrogenase/reductase (SD... 29 3.1
At1g74100.1 68414.m08582 sulfotransferase family protein similar... 28 4.1
At5g46490.2 68418.m05725 disease resistance protein (TIR-NBS cla... 27 7.2
At5g04940.2 68418.m00523 SET domain-containing protein (SUVH1) c... 27 7.2
At5g04940.1 68418.m00522 SET domain-containing protein (SUVH1) c... 27 7.2
At1g01120.1 68414.m00015 fatty acid elongase 3-ketoacyl-CoA synt... 27 7.2
At5g52880.1 68418.m06563 F-box family protein ; similar to SKP1... 27 9.5
At5g10470.1 68418.m01213 kinesin motor protein-related TH65 prot... 27 9.5
At2g28070.1 68415.m03408 ABC transporter family protein 27 9.5
At1g18590.1 68414.m02318 sulfotransferase family protein similar... 27 9.5
>At1g71520.1 68414.m08267 AP2 domain-containing transcription
factor, putative
Length = 143
Score = 30.3 bits (65), Expect = 1.0
Identities = 16/46 (34%), Positives = 21/46 (45%)
Frame = -3
Query: 248 AKDGGLTVDGDSRGAEFGEGKVDAECSWSQKVESDVIDDNVADALE 111
A D G+ VD GA G G + S + E D + +V D LE
Sbjct: 94 ASDAGMAVDAGFHGAVSGSGGCEERSSMANMEEEDKLSISVYDYLE 139
>At1g31540.1 68414.m03869 disease resistance protein (TIR-NBS-LRR
class), putative domain signature TIR-NBS-LRR exists,
suggestive of a disease resistance protein.
Length = 776
Score = 29.9 bits (64), Expect = 1.3
Identities = 10/26 (38%), Positives = 15/26 (57%)
Frame = -3
Query: 296 EYLRRQGFHYWLQPFPAKDGGLTVDG 219
+YLRR+ YW+ P + L +DG
Sbjct: 394 KYLRRRDMEYWMDMLPRLENSLRIDG 419
>At1g52340.1 68414.m05908 short-chain dehydrogenase/reductase (SDR)
family protein similar to stem secoisolariciresinol
dehydrogenase GI:13752458 from [Forsythia x intermedia]
Length = 285
Score = 28.7 bits (61), Expect = 3.1
Identities = 25/73 (34%), Positives = 33/73 (45%), Gaps = 2/73 (2%)
Frame = -3
Query: 221 GDSRG-AEFGEGKVDAECSWSQKVESDVIDDNVADALESQFGYCARCAEDVRNWESVMFG 45
G+S+ A F G V E S V+ V + D L + G C D+RN+ F
Sbjct: 67 GESKETAFFIHGDVRVEDDISNAVDFAVKNFGTLDILINNAGLCGAPCPDIRNYSLSEFE 126
Query: 44 F-FDVDWVKSTFL 9
FDV+ VK FL
Sbjct: 127 MTFDVN-VKGAFL 138
>At1g74100.1 68414.m08582 sulfotransferase family protein similar to
SP|P52837 Flavonol 4'-sulfotransferase (EC 2.8.2.-)
(F4-ST) {Flaveria chloraefolia}; contains Pfam profile
PF00685: Sulfotransferase domain
Length = 338
Score = 28.3 bits (60), Expect = 4.1
Identities = 9/15 (60%), Positives = 11/15 (73%)
Frame = -3
Query: 308 WRPDEYLRRQGFHYW 264
WRPDE L + G H+W
Sbjct: 38 WRPDEILTQYGGHWW 52
>At5g46490.2 68418.m05725 disease resistance protein (TIR-NBS
class), putative domain signature TIR-NBS exists,
suggestive of a disease resistance protein.
Length = 858
Score = 27.5 bits (58), Expect = 7.2
Identities = 10/26 (38%), Positives = 15/26 (57%)
Frame = -3
Query: 296 EYLRRQGFHYWLQPFPAKDGGLTVDG 219
+YLR + YW+ P + GL +DG
Sbjct: 393 KYLRGRNEEYWMDILPRLENGLRLDG 418
>At5g04940.2 68418.m00523 SET domain-containing protein (SUVH1)
contains Pfam profiles PF00856: SET domain, PF05033:
Pre-SET motif, PF02182: YDG/SRA domain; identical to
cDNA SUVH1 (SUVH1) GI:13517742
Length = 670
Score = 27.5 bits (58), Expect = 7.2
Identities = 10/17 (58%), Positives = 14/17 (82%)
Frame = -1
Query: 406 EENNFESGLNIANSKNG 356
E NFESG+N+A+ +NG
Sbjct: 137 ENMNFESGINVADRENG 153
>At5g04940.1 68418.m00522 SET domain-containing protein (SUVH1)
contains Pfam profiles PF00856: SET domain, PF05033:
Pre-SET motif, PF02182: YDG/SRA domain; identical to
cDNA SUVH1 (SUVH1) GI:13517742
Length = 670
Score = 27.5 bits (58), Expect = 7.2
Identities = 10/17 (58%), Positives = 14/17 (82%)
Frame = -1
Query: 406 EENNFESGLNIANSKNG 356
E NFESG+N+A+ +NG
Sbjct: 137 ENMNFESGINVADRENG 153
>At1g01120.1 68414.m00015 fatty acid elongase 3-ketoacyl-CoA
synthase 1 (KCS1) nearly identical to GB:AAC99312
GI:4091810 from [Arabidopsis thaliana]
Length = 528
Score = 27.5 bits (58), Expect = 7.2
Identities = 21/81 (25%), Positives = 37/81 (45%), Gaps = 2/81 (2%)
Frame = -1
Query: 304 DQTNIFDDKASTTGYSHSLPKMVA*PLTATAEALSLGRARSMLNVVGLKRLKVTSL--TT 131
++ + D+ G + + PK+ A AEA+ G S+ G+K +V L
Sbjct: 166 NRAGLGDETYLPRGITSTPPKLNMSEARAEAEAVMFGALDSLFEKTGIKPAEVGILIVNC 225
Query: 130 TLLMPSRANSATVPDALKMSE 68
+L P+ + SA + + KM E
Sbjct: 226 SLFNPTPSLSAMIVNHYKMRE 246
>At5g52880.1 68418.m06563 F-box family protein ; similar to SKP1
interacting partner 2 (SKIP2) TIGR_Ath1:At5g67250
Length = 269
Score = 27.1 bits (57), Expect = 9.5
Identities = 10/35 (28%), Positives = 19/35 (54%)
Frame = -3
Query: 188 KVDAECSWSQKVESDVIDDNVADALESQFGYCARC 84
++ ++ W + + I N ++AL S GYC+ C
Sbjct: 167 RMQSDIDWREAFKKAYIAANSSEALRSGRGYCSYC 201
>At5g10470.1 68418.m01213 kinesin motor protein-related TH65
protein, Arabidopsis thaliana, EMBL:AJ001729; contains
Pfam profile PF00225: Kinesin motor domain
Length = 1273
Score = 27.1 bits (57), Expect = 9.5
Identities = 12/26 (46%), Positives = 17/26 (65%)
Frame = +3
Query: 450 DFPNSSKLTTSRSGRSLSVFPLHHQQ 527
D NS +TSR SLSVF ++++Q
Sbjct: 252 DLANSDSTSTSRFSFSLSVFEIYNEQ 277
>At2g28070.1 68415.m03408 ABC transporter family protein
Length = 730
Score = 27.1 bits (57), Expect = 9.5
Identities = 18/60 (30%), Positives = 28/60 (46%)
Frame = -1
Query: 418 YVVAEENNFESGLNIANSKNGTELPNVDAR*QS*ADSGDQTNIFDDKASTTGYSHSLPKM 239
+ V + + ++ +S + P+VD R + A GD N A+TT S SL KM
Sbjct: 31 FYVRKPGSLRQPISFEDSPEWEDTPDVDLRMEDEAGGGDSIN----DATTTPVSPSLSKM 86
>At1g18590.1 68414.m02318 sulfotransferase family protein similar to
SP|P52837 Flavonol 4'-sulfotransferase (EC 2.8.2.-)
(F4-ST) {Flaveria chloraefolia}; contains Pfam profile
PF00685: Sulfotransferase domain
Length = 346
Score = 27.1 bits (57), Expect = 9.5
Identities = 9/18 (50%), Positives = 11/18 (61%)
Frame = -3
Query: 308 WRPDEYLRRQGFHYWLQP 255
WRP + G H+WLQP
Sbjct: 46 WRPKDPFVEYGGHWWLQP 63
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,712,866
Number of Sequences: 28952
Number of extensions: 221177
Number of successful extensions: 828
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 808
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 828
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1187288784
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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