Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0851
         (806 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

X72575-1|CAA51167.1|  168|Apis mellifera Apidaecin precursor pro...    27   0.27 
DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.       24   1.4  
DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholi...    24   1.4  
AY569697-1|AAS86650.1|  413|Apis mellifera complementary sex det...    23   4.4  

>X72575-1|CAA51167.1|  168|Apis mellifera Apidaecin precursor
           protein.
          Length = 168

 Score = 26.6 bits (56), Expect = 0.27
 Identities = 15/48 (31%), Positives = 24/48 (50%), Gaps = 6/48 (12%)
 Frame = -1

Query: 470 RPQLEHRRCLRS*QNQPGHRRP------QLEHRRCLRSLQNQPGHRRP 345
           +P+  H R  R  + +PG+ RP      +  H R  R  + +PG+ RP
Sbjct: 108 QPRPPHPRLRREPEAEPGNNRPVYIPQPRPPHPRLRREPEAEPGNNRP 155



 Score = 24.2 bits (50), Expect = 1.4
 Identities = 20/73 (27%), Positives = 34/73 (46%), Gaps = 14/73 (19%)
 Frame = -1

Query: 470 RPQLEHRRCLRS*QNQ--PGHRRP------QLEHRRCLRSLQNQPGHRR------PQLEH 333
           +P+  H R  R  +++  PG+ RP      +  H R  R  + +PG+ R      P+  H
Sbjct: 80  QPRPPHPRLRREAESEAEPGNNRPVYIPQPRPPHPRLRREPEAEPGNNRPVYIPQPRPPH 139

Query: 332 RGFLRSLQSQPGN 294
               R  +++PGN
Sbjct: 140 PRLRREPEAEPGN 152


>DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.
          Length = 630

 Score = 24.2 bits (50), Expect = 1.4
 Identities = 14/45 (31%), Positives = 22/45 (48%), Gaps = 2/45 (4%)
 Frame = +3

Query: 123 YIIPDEVIQELALA--GIELSENVDNVAIFDIEIPVDNVDFPVDS 251
           YI P+    E +L   G+E+  N D      + +  DNV  P++S
Sbjct: 153 YIPPELPNDEKSLFENGVEIGINFDKYDNIQVNVSGDNVPQPIES 197


>DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholine
           receptor alpha3subunit protein.
          Length = 566

 Score = 24.2 bits (50), Expect = 1.4
 Identities = 11/45 (24%), Positives = 23/45 (51%), Gaps = 4/45 (8%)
 Frame = -2

Query: 283 NWSFDIFY----EVTESTGKSTLSTGISMSKIATLSTFSLNSIPA 161
           +W++D F      + E  GK+ +  G+ +S+  T   + +  +PA
Sbjct: 169 SWTYDGFQVDLRHIDEIRGKNVVDIGVDLSEFYTSVEWDILEVPA 213


>AY569697-1|AAS86650.1|  413|Apis mellifera complementary sex
           determiner protein.
          Length = 413

 Score = 22.6 bits (46), Expect = 4.4
 Identities = 21/111 (18%), Positives = 39/111 (35%)
 Frame = -1

Query: 500 RCSQGRLVNRRPQLEHRRCLRS*QNQPGHRRPQLEHRRCLRSLQNQPGHRRPQLEHRGFL 321
           R S+ R  +R    E+R+  R  +     +   LE R   +         +   ++    
Sbjct: 230 RYSRERSCSRDRNREYRKKDRRYEKLHNEKEKLLEERTSRKRYSRSREREQKSYKNENSY 289

Query: 320 RSLQSQPGNRHSQLELRHFLRSYRINREIDVVNGNFNVKNRNVVYIFAQFN 168
           R  +     R      R   +  +I   I  ++ N+N  N N  Y +  +N
Sbjct: 290 RKYRETSKERSRDRTERERSKERKI---ISSLSNNYNYNNNNYKYNYNNYN 337


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 209,343
Number of Sequences: 438
Number of extensions: 4463
Number of successful extensions: 15
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 25610547
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)