Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0851
         (806 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g57660.1 68416.m06424 DNA-directed RNA polymerase family prot...    31   0.68 
At3g55700.1 68416.m06188 UDP-glucoronosyl/UDP-glucosyl transfera...    31   0.90 
At1g25540.1 68414.m03171 phytochrome and flowering time regulato...    31   0.90 
At5g31412.1 68418.m03722 hypothetical protein contains Pfam doma...    31   1.2  
At4g25940.1 68417.m03731 epsin N-terminal homology (ENTH) domain...    30   2.1  
At4g21450.2 68417.m03102 vesicle-associated membrane family prot...    30   2.1  
At4g21450.1 68417.m03103 vesicle-associated membrane family prot...    30   2.1  
At5g14280.1 68418.m01670 DNA-binding storekeeper protein-related...    29   2.7  
At2g45000.1 68415.m05603 expressed protein contains Pfam profile...    29   2.7  
At5g62580.1 68418.m07855 expressed protein                             29   3.6  
At5g51200.1 68418.m06349 expressed protein                             28   8.4  
At3g20540.1 68416.m02600 DNA-directed DNA polymerase family prot...    28   8.4  
At1g56520.1 68414.m06499 disease resistance protein (TIR-NBS-LRR...    28   8.4  

>At3g57660.1 68416.m06424 DNA-directed RNA polymerase family protein
            similar to SP|O35134 DNA-directed RNA polymerase I
            largest subunit (EC 2.7.7.6) (RNA polymerase I 194 kDa
            subunit) (RPA194) {Mus musculus}; contains InterPro
            accession IPR000722: RNA polymerase, alpha subunit
          Length = 1670

 Score = 31.5 bits (68), Expect = 0.68
 Identities = 25/96 (26%), Positives = 41/96 (42%), Gaps = 3/96 (3%)
 Frame = +1

Query: 496  HRG*TVEKTNEEIENDSEVGSISWVEYPAELDEDGNGLVIVDLPIEAQPEDLEKAQLVDL 675
            H   T      E +ND    S+S  +   + D+DG G  + DL  +AQ +  ++   +D 
Sbjct: 1314 HNDVTGPIAGNETDNDD---SVSGKQNEDDGDDDGEGTEVDDLGSDAQKQKKQETDEMDY 1370

Query: 676  ---PVENVAEPEDLSPVQVVNPIVENSQSEYPAKDT 774
                 +   EP  +S V+      EN  +E   +DT
Sbjct: 1371 EENSEDETNEPSSISGVEDPEMDSENEDTEVSKEDT 1406


>At3g55700.1 68416.m06188 UDP-glucoronosyl/UDP-glucosyl transferase
           family protein glucuronosyl transferase homolog,
           Lycopersicon esculentum, PIR:S39507 ;contains Pfam
           profile: PF00201 UDP-glucoronosyl and UDP-glucosyl
           transferase
          Length = 460

 Score = 31.1 bits (67), Expect = 0.90
 Identities = 23/68 (33%), Positives = 36/68 (52%), Gaps = 1/68 (1%)
 Frame = +1

Query: 553 GSISWVEYPA-ELDEDGNGLVIVDLPIEAQPEDLEKAQLVDLPVENVAEPEDLSPVQVVN 729
           G+ S+  + A  L  D   L I D  ++    +L   ++ DLPV    EPE+L   +VVN
Sbjct: 141 GASSFCAFAAFPLLRDKGYLPIQDSRLDEPVTELPPLKVKDLPVMETNEPEEL--YRVVN 198

Query: 730 PIVENSQS 753
            +VE ++S
Sbjct: 199 DMVEGAKS 206


>At1g25540.1 68414.m03171 phytochrome and flowering time regulatory
           protein (PFT1) PMID: 12815435
          Length = 836

 Score = 31.1 bits (67), Expect = 0.90
 Identities = 20/83 (24%), Positives = 36/83 (43%), Gaps = 4/83 (4%)
 Frame = -1

Query: 503 PRCSQGRLVNRRPQLEHRRCLRS*QNQPGH----RRPQLEHRRCLRSLQNQPGHRRPQLE 336
           P   Q +      Q + ++ ++  Q Q  H    + PQL+ ++     Q Q  H+  QL+
Sbjct: 679 PNQQQQQQQQLHQQQQQQQQIQQQQQQQQHLQQQQMPQLQQQQQQHQQQQQQQHQLSQLQ 738

Query: 335 HRGFLRSLQSQPGNRHSQLELRH 267
           H    +  Q Q   +H   +L+H
Sbjct: 739 HHQQQQQQQQQQQQQHQLTQLQH 761


>At5g31412.1 68418.m03722 hypothetical protein contains Pfam domain,
           PF04937: Protein of unknown function (DUF 659)
          Length = 433

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 17/51 (33%), Positives = 26/51 (50%)
 Frame = +1

Query: 571 EYPAELDEDGNGLVIVDLPIEAQPEDLEKAQLVDLPVENVAEPEDLSPVQV 723
           E P+E DE+ NG  +   P E   EDLE  +  D+ ++   E ++   V V
Sbjct: 375 EGPSERDEEPNGEPVYQTPNEKPREDLESHEEHDITIDIEFESDNEQVVNV 425


>At4g25940.1 68417.m03731 epsin N-terminal homology (ENTH)
           domain-containing protein contains Pfam PF01417: ENTH
           domain. ENTH (Epsin N-terminal homology) domain; similar
           to  Chain B, Crystal Structure Of N-Terminal Domain Of
           Drosophila Ap180 (GP:13399617) [Drosophila
           melanogaster]; supporting cDNA
           gi|20465326|gb|AY096427.1|
          Length = 601

 Score = 29.9 bits (64), Expect = 2.1
 Identities = 22/73 (30%), Positives = 31/73 (42%)
 Frame = +1

Query: 514 EKTNEEIENDSEVGSISWVEYPAELDEDGNGLVIVDLPIEAQPEDLEKAQLVDLPVENVA 693
           EK  EE E +    S+   E PAE D            IE + ED EK +  D     + 
Sbjct: 331 EKEEEEQEEEEAEHSVQ-PEEPAEADNQKENSEGDQPLIEEEEEDQEKIEEEDAKPSFLI 389

Query: 694 EPEDLSPVQVVNP 732
           + +DL  +  +NP
Sbjct: 390 DTDDLLGLNEINP 402


>At4g21450.2 68417.m03102 vesicle-associated membrane family protein
           / VAMP family protein similar to VAP27 GI:6688926
           [Nicotiana plumbaginifolia]
          Length = 212

 Score = 29.9 bits (64), Expect = 2.1
 Identities = 14/32 (43%), Positives = 19/32 (59%)
 Frame = -1

Query: 656 FSKSSGCASIGRSTITSPFPSSSNSAGYSTQL 561
           F  SSG  +   S  TSPFPS ++S+  S+ L
Sbjct: 23  FRNSSGHRNAASSAATSPFPSGASSSSTSSHL 54


>At4g21450.1 68417.m03103 vesicle-associated membrane family protein
           / VAMP family protein similar to VAP27 GI:6688926
           [Nicotiana plumbaginifolia]
          Length = 295

 Score = 29.9 bits (64), Expect = 2.1
 Identities = 14/32 (43%), Positives = 19/32 (59%)
 Frame = -1

Query: 656 FSKSSGCASIGRSTITSPFPSSSNSAGYSTQL 561
           F  SSG  +   S  TSPFPS ++S+  S+ L
Sbjct: 23  FRNSSGHRNAASSAATSPFPSGASSSSTSSHL 54


>At5g14280.1 68418.m01670 DNA-binding storekeeper protein-related
           contains similarity to storekeeper protein [Solanum
           tuberosum] gi|14268476|emb|CAC39398; contains PF04504:
           Protein of unknown function, DUF573
          Length = 572

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 13/39 (33%), Positives = 20/39 (51%)
 Frame = +1

Query: 514 EKTNEEIENDSEVGSISWVEYPAELDEDGNGLVIVDLPI 630
           E  N++  + S    +SWVE P  +  +   + I DLPI
Sbjct: 295 EAANDDYSSSSSSSIVSWVEIPISMSINIGEISIPDLPI 333


>At2g45000.1 68415.m05603 expressed protein contains Pfam profile:
           PF05064 Nsp1-like C-terminal region
          Length = 739

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 22/50 (44%), Positives = 28/50 (56%), Gaps = 2/50 (4%)
 Frame = -1

Query: 704 SSGSATFSTGRSTSW--AFSKSSGCASIGRSTITSPFPSSSNSAGYSTQL 561
           SS S   +TG S S+  A S S    SI  +T +SPF  SS+SAG +  L
Sbjct: 243 SSSSIFGATGSSPSFSVASSASGSSPSIFGATGSSPFFGSSSSAGSTPSL 292


>At5g62580.1 68418.m07855 expressed protein
          Length = 615

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 16/35 (45%), Positives = 19/35 (54%)
 Frame = +1

Query: 55  HQSNPSKSRISQYRNTKASTLECTSSPTKSFKNSP 159
           H S  S SR+S YRN  A T E  +S  + F  SP
Sbjct: 541 HDSKYSASRMSTYRNRNAETTEIQNSRHR-FNGSP 574


>At5g51200.1 68418.m06349 expressed protein
          Length = 1808

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 22/76 (28%), Positives = 36/76 (47%), Gaps = 2/76 (2%)
 Frame = +3

Query: 90   IPKYESIDAGMYIIPD-EVIQELALAGIELSEN-VDNVAIFDIEIPVDNVDFPVDSVTS* 263
            +P    IDA   +I D     E  L   E+ EN  D++ +  +++ VDN++ P  S+T  
Sbjct: 825  VPMLIKIDAANSLIEDYAACLEGRLEEGEVVENSCDDLGVLIMQLLVDNINRPAPSITH- 883

Query: 264  KMSKLQLRMPISRLTL 311
             + K  L  P+    L
Sbjct: 884  LLLKFDLDAPVEGTVL 899


>At3g20540.1 68416.m02600 DNA-directed DNA polymerase family protein
           similar to PolI-like DNA polymerase [Oryza sativa]
           GI:19912795; contains Pfam profiles PF01612: 3'-5'
           exonuclease, PF00476: DNA polymerase I family A
          Length = 1034

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 11/34 (32%), Positives = 18/34 (52%)
 Frame = +1

Query: 73  KSRISQYRNTKASTLECTSSPTKSFKNSPWPGLN 174
           K R +++RN K   +     PT+ F  S WP ++
Sbjct: 590 KKRATKFRNIKLHRISDRPLPTEKFTASGWPSVS 623


>At1g56520.1 68414.m06499 disease resistance protein (TIR-NBS-LRR
           class), putative domain signature TIR-NBS-LRR exists,
           suggestive of a disease resistance protein.
          Length = 897

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 12/37 (32%), Positives = 23/37 (62%)
 Frame = -2

Query: 427 ISRDIGVLNWSIDVVYEVYRISQDIGVLNWSIEVFYE 317
           +S++    +WS+D + E+ +  +DIG +   + VFYE
Sbjct: 73  LSKNYASSSWSLDELLEILKCKEDIGQI--VMTVFYE 107


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,593,424
Number of Sequences: 28952
Number of extensions: 350709
Number of successful extensions: 1314
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1235
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1312
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1833827200
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)