Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0849
         (591 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1450.06c |grx3||monothiol glutaredoxin Grx3|Schizosaccharomy...    27   2.0  
SPAPB1E7.06c |eme1||Holliday junction resolvase subunit Eme1|Sch...    27   2.7  
SPCC1183.11 ||SPCC31H12.01|MS ion channel protein 1|Schizosaccha...    26   4.7  
SPBC19C7.11 |||ClC chloride channel |Schizosaccharomyces pombe|c...    25   6.2  
SPBC1778.07 |||methyltransferase N2227 family|Schizosaccharomyce...    25   6.2  
SPBC146.01 |med15|SPBP35G2.15|mediator complex subunit Med15 |Sc...    25   8.3  
SPAC637.05c |vma2||V-type ATPase V1 subunit B |Schizosaccharomyc...    25   8.3  
SPBC19G7.01c |msh2|swi8, mut3, SPBC24C6.12c|MutS protein homolog...    25   8.3  

>SPCC1450.06c |grx3||monothiol glutaredoxin Grx3|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 166

 Score = 27.1 bits (57), Expect = 2.0
 Identities = 13/31 (41%), Positives = 17/31 (54%)
 Frame = -2

Query: 134 SLPFEPS*AHKDNACFGSQLQGPVLTFSSPG 42
           S+P  P    KD+  F   L+ PV+ FS PG
Sbjct: 45  SVPSAPKLPAKDSTDFEVFLENPVIIFSRPG 75


>SPAPB1E7.06c |eme1||Holliday junction resolvase subunit
           Eme1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 738

 Score = 26.6 bits (56), Expect = 2.7
 Identities = 12/49 (24%), Positives = 19/49 (38%)
 Frame = +2

Query: 233 NDAIFLLSQLRRPCCTSVPTPTQQTFGSTTKHQTLLLKDSMKNFLENFN 379
           NDA+   S + +PC  S+ +PT            L       N ++  N
Sbjct: 229 NDALTSSSSILKPCMPSIASPTSNRLSHAPSTPNLFPNQDSSNTIDLIN 277


>SPCC1183.11 ||SPCC31H12.01|MS ion channel protein
           1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1011

 Score = 25.8 bits (54), Expect = 4.7
 Identities = 17/40 (42%), Positives = 20/40 (50%)
 Frame = +1

Query: 220 DPQKERCDFPAKSAAKAVLHQCSYPHSTNIWKHDKTSDTT 339
           DP  ++ D    S AKA   Q S  HST    H  TSDT+
Sbjct: 31  DPNSDQAD-NENSDAKAHQPQHSPQHSTENQGHTGTSDTS 69


>SPBC19C7.11 |||ClC chloride channel |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 812

 Score = 25.4 bits (53), Expect = 6.2
 Identities = 9/22 (40%), Positives = 14/22 (63%)
 Frame = +1

Query: 283 CSYPHSTNIWKHDKTSDTTFKG 348
           C Y  +  ++KHD  +D TF+G
Sbjct: 142 CWYSETMGMFKHDLYNDLTFQG 163


>SPBC1778.07 |||methyltransferase N2227 family|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 373

 Score = 25.4 bits (53), Expect = 6.2
 Identities = 10/20 (50%), Positives = 16/20 (80%)
 Frame = +2

Query: 323 KHQTLLLKDSMKNFLENFNR 382
           +H+ LLL+DS  NFL++ +R
Sbjct: 42  EHKDLLLQDSDNNFLKHLSR 61


>SPBC146.01 |med15|SPBP35G2.15|mediator complex subunit Med15
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1063

 Score = 25.0 bits (52), Expect = 8.3
 Identities = 10/15 (66%), Positives = 12/15 (80%)
 Frame = -3

Query: 301 LSGGRNTGATRPSQL 257
           LSG RNT A+RP+ L
Sbjct: 554 LSGARNTAASRPTNL 568


>SPAC637.05c |vma2||V-type ATPase V1 subunit B |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 503

 Score = 25.0 bits (52), Expect = 8.3
 Identities = 12/37 (32%), Positives = 19/37 (51%)
 Frame = +2

Query: 161 ITCASAVKHYHSLVRLIFSMILKRNDAIFLLSQLRRP 271
           I  A+AVK Y    RL ++ +      + +L  +RRP
Sbjct: 7   INAAAAVKDYSIKPRLSYNTVNSITGPLVILDNIRRP 43


>SPBC19G7.01c |msh2|swi8, mut3, SPBC24C6.12c|MutS protein homolog
           2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 982

 Score = 25.0 bits (52), Expect = 8.3
 Identities = 11/33 (33%), Positives = 19/33 (57%)
 Frame = +1

Query: 295 HSTNIWKHDKTSDTTFKGLYEKLLGKF*SFILN 393
           H+T++ KH   S+T++  L   L  KF   +L+
Sbjct: 57  HTTSVLKHHNVSNTSYCNLSPSLFIKFAEDVLS 89


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,288,726
Number of Sequences: 5004
Number of extensions: 44775
Number of successful extensions: 109
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 107
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 109
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 256184654
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)